RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TSPO2Q5TGU0 170 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 ABHD17BQ5VST6 288 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 ZNF66Q6ZN08 573 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 P4HA3Q7Z4N8 544 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 C6orf201Q7Z4U5 140 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 COMMD2Q86X83 199 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 OR2M3Q8NG83 312 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 RNASE8Q8TDE3 154 aaKnown RBP9.55□□□□□ -0.88
CUX1-204ENST00000393824 TOMM40LQ969M1 308 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 SERINC1Q9NRX5 453 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 PLEKHJ1Q9NW61 149 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 MED29Q9NX70 200 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 SSUH2Q9Y2M2 353 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 ZNF407Q9C0G0 2248 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 SPTA1P02549 2419 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 PKD1L2Q7Z442 2459 aa9.55□□□□□ -0.88
CUX1-204ENST00000393824 TCF21O43680 179 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 WISP2O76076 250 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 NXPH2O95156 264 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 NKX2-1P43699 371 aaPredicted RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 ZNF133P52736 654 aaPredicted RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 UCP3P55916 312 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 ZNF121P58317 390 aaPredicted RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 FAM3BP58499 235 aaPredicted RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 TAS2R30P59541 319 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 OR1C1Q15619 314 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 Q6ZSR3 168 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 ODF3L1Q8IXM7 274 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 OR51G1Q8NGK1 321 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 C10orf35Q96D05 121 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 FAM71F1Q96KD3 344 aaPredicted RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 GSX1Q9H4S2 264 aaPredicted RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 GPR173Q9NS66 373 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 RAXQ9Y2V3 346 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 PHF3Q92576 2039 aaKnown RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 FAM221AA4D161 298 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 C1QTNF9BB2RNN3 333 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 IGLV3-1P01715 115 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 IGHG1P01857 330 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 C1QTNF9P0C862 333 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 MMP9P14780 707 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 DTYMKP23919 212 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 DYNLT3P51808 116 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 MTCP1P56278 107 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 PRDX4Q13162 271 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 PMS2P11Q13670 270 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 P2RY6Q15077 328 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 PLPPR5Q32ZL2 321 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 SLC25A53Q5H9E4 307 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 SLC25A47Q6Q0C1 308 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 BTNL3Q6UXE8 466 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 MRPL41Q8IXM3 137 aaKnown RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 ZNF100Q8IYN0 542 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 FADS6Q8N9I5 356 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 OR5D18Q8NGL1 313 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 SGCZQ96LD1 299 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 HDHD3Q9BSH5 251 aaPredicted RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 GNG13Q9P2W3 67 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 POLR1DQ9Y2S0 133 aa9.54□□□□□ -0.88
CUX1-204ENST00000393824 POLR3KQ9Y2Y1 108 aaPredicted RBP9.54□□□□□ -0.88
CUX1-204ENST00000393824 TNRC6AQ8NDV7 1962 aaKnown RBP9.53□□□□□ -0.88
CUX1-204ENST00000393824 DNAJC13O75165 2243 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 IGLV3-32A0A0A0MS00 114 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 ZNF850A8MQ14 1090 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 TRDCB7Z8K6 153 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 CELA3AP09093 270 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 MMP7P09237 267 aaPredicted RBP9.53□□□□□ -0.88
CUX1-204ENST00000393824 OMGP23515 440 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 HOXC12P31275 282 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 PLA2G5P39877 138 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 CLRN1P58418 232 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 SRPXP78539 464 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 RUNX1Q01196 453 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 PHLDA2Q53GA4 152 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 WDR25Q64LD2 544 aaPredicted RBP9.53□□□□□ -0.88
CUX1-204ENST00000393824 FAM185AQ8N0U4 392 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 TMEM123Q8N131 208 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 OR5L1Q8NGL2 311 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 PP6455Q8WZ26 134 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 ZNF845Q96IR2 970 aaPredicted RBP9.53□□□□□ -0.88
CUX1-204ENST00000393824 PNRC2Q9NPJ4 139 aaKnown RBP9.53□□□□□ -0.88
CUX1-204ENST00000393824 B3GAT1Q9P2W7 334 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 A0A0U1RQV5 110 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 NKX2-6A6NCS4 301 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 ZNF891A8MT65 544 aaPredicted RBP9.53□□□□□ -0.88
CUX1-204ENST00000393824 PHF1O43189 567 aaPredicted RBP9.53□□□□□ -0.88
CUX1-204ENST00000393824 SIAH2O43255 324 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 ZIC3O60481 467 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 CD55P08174 381 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 GLI4P10075 376 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 ACOT6Q3I5F7 207 aaPredicted RBP9.53□□□□□ -0.88
CUX1-204ENST00000393824 ACSF3Q4G176 576 aaPredicted RBP9.53□□□□□ -0.88
CUX1-204ENST00000393824 UEVLDQ8IX04 471 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 GBGT1Q8N5D6 347 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 CCDC71LQ8N9Z2 235 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 MBD3L1Q8WWY6 194 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 Q96M66 194 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 AGMATQ9BSE5 352 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 FKBP11Q9NYL4 201 aa9.53□□□□□ -0.88
CUX1-204ENST00000393824 LAMP3Q9UQV4 416 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms