RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 TP53RKQ96S44 253 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 NKX2-6A6NCS4 301 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 H0Y980 276 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 J3KRW8 73 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 IGHV3-13P01766 116 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 IGHV3-7P01780 117 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 TSPOP30536 169 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 SUCLG1P53597 346 aaKnown RBP5.64□□□□□ -1.51
UPF2-201ENST00000356352 KLF9Q13886 244 aaPredicted RBP5.64□□□□□ -1.51
UPF2-201ENST00000356352 INSL4Q14641 139 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 C3AR1Q16581 482 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 TM4SF20Q53R12 229 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 ZNF841Q6ZN19 808 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 ZNF645Q8N7E2 425 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 RPP25Q9BUL9 199 aaKnown RBP5.64□□□□□ -1.51
UPF2-201ENST00000356352 TNFSF18Q9UNG2 199 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 TRPM3Q9HCF6 1732 aaPredicted RBP5.64□□□□□ -1.51
UPF2-201ENST00000356352 TRAV20A0A0B4J274 112 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 OR4C45A6NMZ5 311 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 C17orf51A8MQB3 221 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 C9orf172C9J069 976 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 ZNF324O75467 553 aaPredicted RBP5.64□□□□□ -1.51
UPF2-201ENST00000356352 DOCK1Q14185 1865 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 HERPUD1Q15011 391 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 MMD2Q8IY49 270 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 ABHD3Q8WU67 409 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 PCGF1Q9BSM1 259 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 ELOVL1Q9BW60 279 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 OR2J1Q9GZK6 312 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 SLX4Q8IY92 1834 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 GOLGA4Q13439 2230 aaKnown RBP5.64□□□□□ -1.51
UPF2-201ENST00000356352 DSPPQ9NZW4 1301 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.64□□□□□ -1.51
UPF2-201ENST00000356352 LEUTXA8MZ59 168 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 FSTP19883 344 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 NAAAQ02083 359 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 FAM106AQ4KMX7 169 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 FAM27BQ5VT28 67 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 LDLRAD3Q86YD5 345 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 NUP37Q8NFH4 326 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 DDB2Q92466 427 aa5.64□□□□□ -1.51
UPF2-201ENST00000356352 IGHV3OR15-7A0A075B7D8 119 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 CEACAM18A8MTB9 384 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 PRR33A8MZF0 331 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 H3BQ15 152 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 OR2A4O95047 310 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 CCL4P13236 92 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 IER3P46695 156 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 AESQ08117 197 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 PIGYQ3MUY2 71 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 TSPO2Q5TGU0 170 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 PCSK4Q6UW60 755 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 C16orf47Q6ZP98 133 aaPredicted RBP5.63□□□□□ -1.51
UPF2-201ENST00000356352 ZNF721Q8TF20 911 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 GALNT14Q96FL9 552 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 SNX22Q96L94 193 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 OR2A7Q96R45 310 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 PRO1933Q9H354 126 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 MSL2Q9HCI7 577 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 FUT9Q9Y231 359 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 TMEM56-RWDD3S4R434 201 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 OR4C46A6NHA9 309 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 PRSS23O95084 383 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 SCGB1A1P11684 91 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 FGF12P61328 243 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 PKIAP61925 76 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 CIRBPQ14011 172 aaKnown RBP5.63□□□□□ -1.51
UPF2-201ENST00000356352 SIGIRRQ6IA17 410 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 BHLHA9Q7RTU4 235 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 DYRK2Q92630 601 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 ALX4Q9H161 411 aaPredicted RBP5.63□□□□□ -1.51
UPF2-201ENST00000356352 LPAR2Q9HBW0 351 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 CLDN14O95500 239 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 IFI6P09912 130 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 VSIG8P0DPA2 414 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 ZNF738Q8NE65 137 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 OR52M1Q8NGK5 317 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 FGF11Q92914 225 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 TREM2Q9NZC2 230 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 V9GYH0 126 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 MICAL3Q7RTP6 2002 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 MEX3AA1L020 520 aaKnown RBP5.63□□□□□ -1.51
UPF2-201ENST00000356352 CD74P04233 296 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 HOXB3P14651 431 aaPredicted RBP5.63□□□□□ -1.51
UPF2-201ENST00000356352 BTF3P20290 206 aaKnown RBP5.63□□□□□ -1.51
UPF2-201ENST00000356352 UCP2P55851 309 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 VAX1Q5SQQ9 334 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 FAM214BQ7L5A3 538 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 C9orf40Q8IXQ3 194 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 LRRC75AQ8NAA5 344 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 TMEM70Q9BUB7 260 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 MRPS18AQ9NVS2 196 aaKnown RBP5.63□□□□□ -1.51
UPF2-201ENST00000356352 RCC2Q9P258 522 aaKnown RBP5.63□□□□□ -1.51
UPF2-201ENST00000356352 METTL1Q9UBP6 276 aaKnown RBP5.63□□□□□ -1.51
UPF2-201ENST00000356352 OPN4Q9UHM6 478 aa5.63□□□□□ -1.51
UPF2-201ENST00000356352 TNRC6CQ9HCJ0 1690 aaKnown RBP5.62□□□□□ -1.51
UPF2-201ENST00000356352 A0A087X0M5 115 aa5.62□□□□□ -1.51
UPF2-201ENST00000356352 A0A1B0GX30 115 aa5.62□□□□□ -1.51
UPF2-201ENST00000356352 CA2P00918 260 aa5.62□□□□□ -1.51
UPF2-201ENST00000356352 FCGR3AP08637 254 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms