RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 OR10S1Q8NGN2 331 aa8.66□□□□□ -1.02
SYNE1-203ENST00000354674 TVP23CQ96ET8 276 aa8.66□□□□□ -1.02
SYNE1-203ENST00000354674 MS4A10Q96PG2 267 aa8.66□□□□□ -1.02
SYNE1-203ENST00000354674 RNF2Q99496 336 aa8.66□□□□□ -1.02
SYNE1-203ENST00000354674 PNRC2Q9NPJ4 139 aaKnown RBP8.66□□□□□ -1.02
SYNE1-203ENST00000354674 TMEM38BQ9NVV0 291 aa8.66□□□□□ -1.02
SYNE1-203ENST00000354674 SH3BGRL2Q9UJC5 107 aa8.66□□□□□ -1.02
SYNE1-203ENST00000354674 ETV7Q9Y603 341 aa8.66□□□□□ -1.02
SYNE1-203ENST00000354674 LOC105371242A0A075B767 164 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 NKX6-3A6NJ46 265 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 ZNHIT1O43257 154 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 GLIPR1P48060 266 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 COL5A1-AS1Q5SY13 56 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 C1orf194Q5T5A4 169 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 AWAT2Q6E213 333 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 DPPA3Q6W0C5 159 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 MCEMP1Q8IX19 187 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 AQP10Q96PS8 301 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 TRIB1Q96RU8 372 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 PRRT1Q99946 306 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 PCGF1Q9BSM1 259 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 RBM24Q9BX46 236 aaKnown RBP8.65□□□□□ -1.02
SYNE1-203ENST00000354674 SLC7A10Q9NS82 523 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 GNG13Q9P2W3 67 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 PTPRQQ9UMZ3 2332 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 DNAJC13O75165 2243 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 LOC100289279A0A1B0GTE1 492 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 GRIFINA4D1Z8 144 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 NDUFB8O95169 186 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 PTGER4P35408 488 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 OR3A2P47893 321 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 LINC00346Q8IVM7 164 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 SAXO1Q8IYX7 474 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 OR13C3Q8NGS6 347 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 C15orf40Q8WUR7 153 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 TMEM18Q96B42 140 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 ST6GALNAC5Q9BVH7 336 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 TAS2R4Q9NYW5 299 aa8.65□□□□□ -1.02
SYNE1-203ENST00000354674 PHF3Q92576 2039 aaKnown RBP8.65□□□□□ -1.02
SYNE1-203ENST00000354674 MBD3L4A6NDZ8 208 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-203ENST00000354674 MBD3L3A6NE82 208 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-203ENST00000354674 MBD3L5A6NJ08 208 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-203ENST00000354674 WDR1O75083 606 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 JTBO76095 146 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 GCGP01275 180 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 CD81P60033 236 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 RPL23AP62750 156 aaKnown RBP8.65□□□□□ -1.03
SYNE1-203ENST00000354674 VAMP3Q15836 100 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 ADIRFQ15847 76 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 SEM1Q6ZVN7 128 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 MBD3L2Q8NHZ7 208 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-203ENST00000354674 WFDC12Q8WWY7 111 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 APH1AQ96BI3 265 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 SLC35E1Q96K37 410 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 FAM103A1Q9BTL3 118 aaKnown RBP8.65□□□□□ -1.03
SYNE1-203ENST00000354674 C5orf66Q9H5L9 145 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 ELOVL3Q9HB03 270 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 C14orf166Q9Y224 244 aaKnown RBP8.65□□□□□ -1.03
SYNE1-203ENST00000354674 LRP12Q9Y561 859 aa8.65□□□□□ -1.03
SYNE1-203ENST00000354674 RUNX1Q01196 453 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 CEACAM16Q2WEN9 425 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 TMEM217Q8N7C4 229 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 C9orf106Q8NAJ2 232 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 OR4D6Q8NGJ1 314 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 OR4K15Q8NH41 348 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 FAM57AQ8TBR7 257 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 SLAMF6Q96DU3 332 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 FOXB1Q99853 325 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 NMES1Q9C002 83 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 ZNF581Q9P0T4 197 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 ZNF835Q9Y2P0 537 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 HEATR1Q9H583 2144 aaKnown RBP8.64□□□□□ -1.03
SYNE1-203ENST00000354674 ZZEF1O43149 2961 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 GPRIN2O60269 458 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 DANCRP0C864 163 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 FPR2P25090 351 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 CTSSP25774 331 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 CDKN1AP38936 164 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 GUCA1AP43080 201 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-203ENST00000354674 SLC6A9P48067 706 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 CYCSP99999 105 aaKnown RBP8.64□□□□□ -1.03
SYNE1-203ENST00000354674 FAM214BQ7L5A3 538 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 ATOH7Q8N100 152 aa8.64□□□□□ -1.03
SYNE1-203ENST00000354674 CISD2Q8N5K1 135 aaKnown RBP8.64□□□□□ -1.03
SYNE1-203ENST00000354674 PATZ1Q9HBE1 687 aaKnown RBP8.64□□□□□ -1.03
SYNE1-203ENST00000354674 M0QZK8 103 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 RAB29O14966 203 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 GPR137BO60478 399 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 GGCTO75223 188 aaKnown RBP8.63□□□□□ -1.03
SYNE1-203ENST00000354674 KIR2DL2P43627 348 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-203ENST00000354674 CX3CR1P49238 355 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 SLC16A14Q7RTX9 510 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 SLC22A24Q8N4F4 322 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 OR52N4Q8NGI2 321 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 OR2G3Q8NGZ4 309 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 SNRNP40Q96DI7 357 aaKnown RBP8.63□□□□□ -1.03
SYNE1-203ENST00000354674 ZNF430Q9H8G1 570 aaPredicted RBP8.63□□□□□ -1.03
SYNE1-203ENST00000354674 OR52A1Q9UKL2 312 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 FAM215AQ9Y5M1 114 aa8.63□□□□□ -1.03
SYNE1-203ENST00000354674 WIPF3A6NGB9 483 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms