RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 GAGE10A6NGK3 116 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ANXA2P2A6NMY6 339 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 A6NNC1 897 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 XKRYO14609 159 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 TP53I11O14683 189 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SLC25A17O43808 307 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 DEDDO75618 318 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 TRAPPC6AO75865 159 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 DIRAS3O95661 229 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 CDS2O95674 445 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 HLA-HP01893 362 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SERPINA5P05154 406 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ZNF24P17028 368 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 OTX2P32243 289 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 PRSS3P35030 304 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 HTR2BP41595 481 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 OR3A3P47888 321 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 CFHR3Q02985 330 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 RIPPLY1Q0D2K3 151 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ARL16Q0P5N6 197 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 FOXE3Q13461 319 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 PPA1Q15181 289 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SURF2Q15527 256 aaPredicted RBP1.9□□□□□ -2.11
VPS54-202ENST00000354504 ZNF726P1Q15940 193 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 C17orf58Q2M2W7 97 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ZFP69Q49AA0 526 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 CLVS2Q5SYC1 327 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 LDLRAD2Q5SZI1 272 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 FBXW9Q5XUX1 488 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 OR2A2Q6IF42 318 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 GALNTL5Q7Z4T8 443 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ABHD12BQ7Z5M8 362 aaPredicted RBP1.9□□□□□ -2.11
VPS54-202ENST00000354504 ZNF429Q86V71 674 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 THRSPQ92748 146 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 FAM46BQ96A09 425 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ZNF488Q96MN9 340 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 SLC25A21Q9BQT8 299 aaPredicted RBP1.9□□□□□ -2.11
VPS54-202ENST00000354504 GINS4Q9BRT9 223 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ZNF747Q9BV97 191 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 RGCCQ9H4X1 137 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 AAMDCQ9H7C9 122 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 CALHM2Q9HA72 323 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 CENPMQ9NSP4 180 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 NKIRAS2Q9NYR9 191 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 ANXA10Q9UJ72 324 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 DNAH11Q96DT5 4516 aa1.9□□□□□ -2.11
VPS54-202ENST00000354504 VWFP04275 2813 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SERPINE3A8MV23 424 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 FAM25AB3EWG3 89 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 FAM25CB3EWG5 89 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 FAM25GB3EWG6 89 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TEX22C9J3V5 150 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CCSO14618 274 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 FARS2O95363 451 aaKnown RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 LCATP04180 440 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CSN2P05814 226 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CTSDP07339 412 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 HCKP08631 526 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SCTP09683 121 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ANXA3P12429 323 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 OR3A1P47881 315 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 NHLH1Q02575 133 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ZNF154Q13106 437 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TSC22D1Q15714 1073 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TMEM211Q6ICI0 200 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TMEM88Q6PEY1 159 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PLET1Q6UQ28 207 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 WDR82Q6UXN9 313 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CENPVQ7Z7K6 275 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 LUZP2Q86TE4 346 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 COMMD2Q86X83 199 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SLC38A6Q8IZM9 456 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 FGFRL1Q8N441 504 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ARRDC1Q8N5I2 433 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SCCPDHQ8NBX0 429 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 DEFB124Q8NES8 71 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 GMPPAQ96IJ6 420 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 TMEM204Q9BSN7 226 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PKIBQ9C010 78 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SELENOIQ9C0D9 397 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 ATG5Q9H1Y0 275 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 RANBP3Q9H6Z4 567 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 RHOFQ9HBH0 211 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 BEX1Q9HBH7 125 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 POLR1DQ9Y2S0 133 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TIMM10BQ9Y5J6 103 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CSPG4Q6UVK1 2322 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SETD2Q9BYW2 2564 aaPredicted RBP1.89□□□□□ -2.11
VPS54-202ENST00000354504 ALMS1Q8TCU4 4167 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CCDC168Q8NDH2 2452 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 TEX15Q9BXT5 2789 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PTPN13Q12923 2485 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 IGHV2OR16-5A0A0B4J2B6 119 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 PSMB11A5LHX3 300 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 FAM166BA8MTA8 275 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 SHISA9B4DS77 424 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 IGHV3-9P01782 118 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 UBBP0CG47 229 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 CEACAM1P13688 526 aa1.89□□□□□ -2.11
VPS54-202ENST00000354504 NFYAP23511 347 aaPredicted RBP1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms