RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ZNF385AQ96PM9 386 aaKnown RBP11.02□□□□□ -0.65
SDC3-201ENST00000336798 GSN-AS1Q9NRJ2 163 aa11.02□□□□□ -0.65
SDC3-201ENST00000336798 IFITM10A6NMD0 228 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 PTP4A3O75365 173 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 TMEM50BP56557 158 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 EWSR1Q01844 656 aaKnown RBP eCLIP11.01□□□□□ -0.65
SDC3-201ENST00000336798 IZUMO4Q1ZYL8 232 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 C1orf185Q5T7R7 199 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 LILRA6Q6PI73 481 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 ANAPC16Q96DE5 110 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 ABHD14BQ96IU4 210 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 A6NDN8 102 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 PSG6Q00889 435 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 HSPB8Q9UJY1 196 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 DDX60LQ5H9U9 1706 aaKnown RBP11.01□□□□□ -0.65
SDC3-201ENST00000336798 ECM29Q5VYK3 1845 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 GZMHP20718 246 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 ATG4DQ86TL0 474 aaPredicted RBP11.01□□□□□ -0.65
SDC3-201ENST00000336798 FADS6Q8N9I5 356 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 IGLV3-16A0A075B6K0 115 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 PRR35P0CG20 571 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 SLC35E3Q7Z769 313 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 RPS4Y2Q8TD47 263 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 ADAT3Q96EY9 351 aaPredicted RBP11.01□□□□□ -0.65
SDC3-201ENST00000336798 TMEM38BQ9NVV0 291 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 PRDX2P32119 198 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 ZFP36L2P47974 494 aaKnown RBP11.01□□□□□ -0.65
SDC3-201ENST00000336798 PLP1P60201 277 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 TEX30Q5JUR7 227 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 TEPPQ6URK8 271 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 STXBP6Q8NFX7 210 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 TIMP4Q99727 224 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 PAXXQ9BUH6 204 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 METTL1Q9UBP6 276 aaKnown RBP11.01□□□□□ -0.65
SDC3-201ENST00000336798 WIPI2Q9Y4P8 454 aa11.01□□□□□ -0.65
SDC3-201ENST00000336798 SS18L1O75177 396 aaPredicted RBP11□□□□□ -0.65
SDC3-201ENST00000336798 HERPUD1Q15011 391 aa11□□□□□ -0.65
SDC3-201ENST00000336798 OR1L8Q8NGR8 309 aa11□□□□□ -0.65
SDC3-201ENST00000336798 DDA1Q9BW61 102 aa11□□□□□ -0.65
SDC3-201ENST00000336798 FGF9P31371 208 aaPredicted RBP11□□□□□ -0.65
SDC3-201ENST00000336798 ID4P47928 161 aa11□□□□□ -0.65
SDC3-201ENST00000336798 ZNF256Q9Y2P7 627 aaPredicted RBP11□□□□□ -0.65
SDC3-201ENST00000336798 NKX2-8O15522 239 aa11□□□□□ -0.65
SDC3-201ENST00000336798 DEDDO75618 318 aa11□□□□□ -0.65
SDC3-201ENST00000336798 ZIC1Q15915 447 aa11□□□□□ -0.65
SDC3-201ENST00000336798 COX14Q96I36 57 aa11□□□□□ -0.65
SDC3-201ENST00000336798 CA10Q9NS85 328 aa11□□□□□ -0.65
SDC3-201ENST00000336798 DTX4Q9Y2E6 619 aa11□□□□□ -0.65
SDC3-201ENST00000336798 F12P00748 615 aaPredicted RBP11□□□□□ -0.65
SDC3-201ENST00000336798 LIFP15018 202 aa11□□□□□ -0.65
SDC3-201ENST00000336798 HINT1P49773 126 aaPredicted RBP11□□□□□ -0.65
SDC3-201ENST00000336798 OR10J6PQ8NGY7 276 aa11□□□□□ -0.65
SDC3-201ENST00000336798 ZNF714Q96N38 554 aa11□□□□□ -0.65
SDC3-201ENST00000336798 IL36RNQ9UBH0 155 aa11□□□□□ -0.65
SDC3-201ENST00000336798 OR2W1Q9Y3N9 320 aa11□□□□□ -0.65
SDC3-201ENST00000336798 REG1AP05451 166 aa11□□□□□ -0.65
SDC3-201ENST00000336798 ZNF735P0CB33 412 aa11□□□□□ -0.65
SDC3-201ENST00000336798 HIST1H1BP16401 226 aaKnown RBP11□□□□□ -0.65
SDC3-201ENST00000336798 ERVFRD-1P60508 538 aa11□□□□□ -0.65
SDC3-201ENST00000336798 FBXW9Q5XUX1 488 aa11□□□□□ -0.65
SDC3-201ENST00000336798 C9orf40Q8IXQ3 194 aa11□□□□□ -0.65
SDC3-201ENST00000336798 ZNF519Q8TB69 540 aa11□□□□□ -0.65
SDC3-201ENST00000336798 SF3B5Q9BWJ5 86 aaKnown RBP11□□□□□ -0.65
SDC3-201ENST00000336798 RAB33BQ9H082 229 aa11□□□□□ -0.65
SDC3-201ENST00000336798 ADAMTSL3P82987 1691 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 FAM74A7A6NL05 159 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 LRRC75BQ2VPJ9 315 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 FAM74A3Q4VXF1 159 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 OR2V2Q96R30 315 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 C21orf140B9A014 251 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 CXorf1O96002 111 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 CYB5R3P00387 301 aaPredicted RBP10.99□□□□□ -0.65
SDC3-201ENST00000336798 RCC1P18754 421 aaPredicted RBP10.99□□□□□ -0.65
SDC3-201ENST00000336798 IL19Q9UHD0 177 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 VAX2Q9UIW0 290 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 TMEM189A5PLL7 270 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 J3QT63 122 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 UPK3AO75631 287 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 MMP9P14780 707 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 ZNF826PQ6ZT77 177 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 STPG2Q8N412 459 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 LEAP2Q969E1 77 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 ALG14Q96F25 216 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 TRAV8-7A0A075B6U6 113 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 H3BTX0 84 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 ZIC3O60481 467 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 MBPP02686 304 aaPredicted RBP10.99□□□□□ -0.65
SDC3-201ENST00000336798 PGLYRP3Q96LB9 341 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 GPR61Q9BZJ8 451 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 CA2P00918 260 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 CXCL3P19876 107 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 SSTR5P35346 364 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 MAS1LP35410 378 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 EFNB2P52799 333 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 IFITM2Q01629 132 aa10.99□□□□□ -0.65
SDC3-201ENST00000336798 GMPPAQ96IJ6 420 aaPredicted RBP10.99□□□□□ -0.65
SDC3-201ENST00000336798 MAST2Q6P0Q8 1798 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 GCGP01275 180 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 SPRED2Q7Z698 418 aa10.98□□□□□ -0.65
SDC3-201ENST00000336798 KLK15Q9H2R5 256 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms