RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CEACAM3P40198 252 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 RORCP51449 518 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 ACTG1P63261 375 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 HLA-DRB3P79483 266 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 GNMTQ14749 295 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 C16orf87Q6PH81 154 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 SAMD12Q8N8I0 201 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 OR10X1Q8NGY0 326 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 OR5R1Q8NH85 324 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 RAB2BQ8WUD1 216 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 CREB3L1Q96BA8 519 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 KCTD12Q96CX2 325 aaKnown RBP12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 ABCB10Q9NRK6 738 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 ELF5Q9UKW6 265 aaPredicted RBP12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 MGAT4AQ9UM21 535 aa12.85□□□□□ -0.35
CCDC28A-201ENST00000332797 TMEM235A6NFC5 223 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 NOL3O60936 208 aaKnown RBP12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 FCGR3AP08637 254 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 PPP1CCP36873 323 aaKnown RBP12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 TALDO1P37837 337 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 TMBIM6P55061 237 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 HTD2P86397 168 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 LY6EQ16553 131 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 AANATQ16613 207 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 UBE2NLQ5JXB2 153 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 TPTE2P1Q5T6R2 138 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 IZUMO1Q8IYV9 350 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 DIABLOQ9NR28 239 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 COMMD3Q9UBI1 195 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 JPT1Q9UK76 154 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 VPREB3Q9UKI3 123 aa12.84□□□□□ -0.35
CCDC28A-201ENST00000332797 TRAV18A0A075B6X5 111 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 FAM181BA6NEQ2 426 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 POM121CA8CG34 1229 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 SLC31A2O15432 143 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 GSTP1P09211 210 aaKnown RBP12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 RAB13P51153 203 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 MADCAM1Q13477 382 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 SPCS2Q15005 226 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 Q3ZCU0 254 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 HACD4Q5VWC8 232 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 C8orf31Q8N9H6 132 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 MAFIPQ8WZ33 124 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 TOMM40LQ969M1 308 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 RPEQ96AT9 228 aa12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 ZNF230Q9UIE0 474 aaPredicted RBP12.83□□□□□ -0.36
CCDC28A-201ENST00000332797 A0A0A6YYH2 397 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 A6NJ64 397 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 VGLL3A8MV65 326 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 TRDCB7Z8K6 153 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 LY6LH3BQJ8 138 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 GPR137BO60478 399 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 SCTP09683 121 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 GNG2P59768 71 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 ZNF260Q3ZCT1 412 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 MORN2Q502X0 79 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 STEAP3Q658P3 488 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 LINC00311Q8N616 119 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 ZNF439Q8NDP4 499 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 NUDCD2Q8WVJ2 157 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 ACOT12Q8WYK0 555 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 S100A16Q96FQ6 103 aaKnown RBP12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 BCL7BQ9BQE9 202 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 ABCG5Q9H222 651 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 BATF3Q9NR55 127 aa12.82□□□□□ -0.36
CCDC28A-201ENST00000332797 COL6A5A8TX70 2615 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 RGS11O94810 467 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 IL3RAP26951 378 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 ARHGDIBP52566 201 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 ZNF134P52741 427 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 PNLIPRP3Q17RR3 467 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 CT45A1Q5HYN5 189 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 CCDC144NLQ6NUI1 221 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 SLC25A48Q6ZT89 311 aaKnown RBP12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 DTX3Q8N9I9 347 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 CT45A3Q8NHU0 189 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 PIFOQ8TCI5 191 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 AP3S1Q92572 193 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 TAF15Q92804 592 aaKnown RBP eCLIP12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 ISOC1Q96CN7 298 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 OCSTAMPQ9BR26 566 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 ABHD14AQ9BUJ0 271 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 SLC23A1Q9UHI7 598 aa12.81□□□□□ -0.36
CCDC28A-201ENST00000332797 OOSP1A8MZH6 123 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 FABP7O15540 132 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 HSPA12AO43301 675 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 YPEL1O60688 119 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 CRYBA1P05813 215 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 EIF4EP06730 217 aaKnown RBP12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 ZNF182P17025 639 aaPredicted RBP12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 DTYMKP23919 212 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 KIR2DS4P43632 304 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 DIAPH2-AS1Q14236 149 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 KIR2DS1Q14954 304 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 MZT2AQ6P582 158 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 GCDHQ92947 438 aaPredicted RBP12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 YPEL2Q96QA6 119 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 OR1A1Q9P1Q5 309 aa12.8□□□□□ -0.36
CCDC28A-201ENST00000332797 IGKV1-6A0A0C4DH72 117 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms