RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 COL11A1P12107 1806 aaPredicted RBP6.96□□□□□ -1.3
CIITA-201ENST00000324288 C9orf172C9J069 976 aa6.96□□□□□ -1.3
CIITA-201ENST00000324288 RARRES2Q99969 163 aa6.96□□□□□ -1.3
CIITA-201ENST00000324288 HDHD3Q9BSH5 251 aaPredicted RBP6.96□□□□□ -1.3
CIITA-201ENST00000324288 RBM38Q9H0Z9 239 aaKnown RBP6.96□□□□□ -1.3
CIITA-201ENST00000324288 PDFQ9HBH1 243 aa6.96□□□□□ -1.3
CIITA-201ENST00000324288 CES1P1Q9UKY3 287 aa6.96□□□□□ -1.3
CIITA-201ENST00000324288 MGAT2Q10469 447 aa6.96□□□□□ -1.3
CIITA-201ENST00000324288 MOGAT3Q86VF5 341 aa6.96□□□□□ -1.3
CIITA-201ENST00000324288 RAB24Q969Q5 203 aa6.96□□□□□ -1.3
CIITA-201ENST00000324288 CGB1A6NKQ9 187 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 IP6K3Q96PC2 410 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 HIST1H4GQ99525 98 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 ATAD5Q96QE3 1844 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 TM4SF20Q53R12 229 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 PET117Q6UWS5 81 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 HOXA4Q00056 320 aaPredicted RBP6.95□□□□□ -1.3
CIITA-201ENST00000324288 FAM222BQ8WU58 562 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 ANAPC16Q96DE5 110 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 SIGLEC7Q9Y286 467 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 EXOGQ9Y2C4 368 aaKnown RBP6.95□□□□□ -1.3
CIITA-201ENST00000324288 COL16A1Q07092 1604 aaPredicted RBP6.95□□□□□ -1.3
CIITA-201ENST00000324288 SRFP11831 508 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 TGIF1Q15583 401 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 OR10D3Q8NH80 312 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 TMEM167BQ9NRX6 74 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 IGKV3OR2-268A0A0C4DH90 116 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 A0A1W2PN81 502 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 PLAUP00749 431 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 PLCH1Q4KWH8 1693 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 OR4C13Q8NGP0 309 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 NOTCH2Q04721 2471 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 SLC25A17O43808 307 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 LGALS7P47929 136 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 C19orf54Q5BKX5 351 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 OR8I2Q8N0Y5 310 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 PTPMT1Q8WUK0 201 aaPredicted RBP6.95□□□□□ -1.3
CIITA-201ENST00000324288 ASCL3Q9NQ33 180 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 IGHV3OR16-12A0A075B7B8 117 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 SNAI2O43623 268 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 P2RY1P47900 373 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 CADM4Q8NFZ8 388 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 WDR13Q9H1Z4 485 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 SCN4AP35499 1836 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 A0A0B4J2E0 115 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 A0A1B0GX12 115 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 CTSDP07339 412 aaPredicted RBP6.95□□□□□ -1.3
CIITA-201ENST00000324288 ATP6V0CP27449 155 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 OR4X1Q8NH49 305 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 STARD10Q9Y365 291 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 BHLHA15Q7RTS1 189 aaPredicted RBP6.95□□□□□ -1.3
CIITA-201ENST00000324288 HIVEP3Q5T1R4 2406 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 FXYD3Q14802 87 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 STPG2Q8N412 459 aa6.95□□□□□ -1.3
CIITA-201ENST00000324288 A0A1W2PPC4 97 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 H0YL77 283 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 OR4A8P0C604 315 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 KRTCAP3Q53RY4 240 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 APCDD1LQ8NCL9 501 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 RNF133Q8WVZ7 376 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 ZNF764Q96H86 408 aaPredicted RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 TSPAN2O60636 221 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 TWIST1Q15672 202 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 EID2BQ96D98 161 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 DMRTA2Q96SC8 542 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 PDCD6O75340 191 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 RUNX1Q01196 453 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 PIGYQ3MUY2 71 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 ZNF793Q6ZN11 406 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 PTX4Q96A99 478 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 NRIP2Q9BQI9 281 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 SERGEFQ9UGK8 458 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 PRRC2AP48634 2157 aaKnown RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 PRSS2P07478 247 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 EPHA8P29322 1005 aaPredicted RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 ACVR1Q04771 509 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 BIVMQ86UB2 503 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 Q8IYB0 196 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 NUDT16L1Q9BRJ7 211 aaKnown RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 MRM2Q9UI43 246 aaKnown RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 TJP1Q07157 1748 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 ANKRD20A5PA0PJZ0 165 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 MFSD2BA6NFX1 497 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 PLPPR5Q32ZL2 321 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 ANKRD55Q3KP44 614 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 ANKRD37Q7Z713 158 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 OR5R1Q8NH85 324 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 PTP4A1Q93096 173 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 OPN4Q9UHM6 478 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 IGHV5-51A0A0C4DH38 117 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 PNLIPP16233 465 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 KIR2DS2P43631 304 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 PAFAH1B2P68402 229 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 MAJINQ3KP22 176 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 SLC23A3Q6PIS1 610 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 STXBP6Q8NFX7 210 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 DPH3Q96FX2 82 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 WNT10AQ9GZT5 417 aa6.94□□□□□ -1.3
CIITA-201ENST00000324288 MRPL18Q9H0U6 180 aaKnown RBP6.94□□□□□ -1.3
CIITA-201ENST00000324288 CCL28Q9NRJ3 127 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms