RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 J3QR06 171 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 CCL2P13500 99 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 GLRX2Q9NS18 164 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 TCFL5Q9UL49 500 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 NDUFB4O95168 129 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 KIAA0040Q15053 153 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 SLC25A40Q8TBP6 338 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 C7orf66A4D0T2 115 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 FCARP24071 287 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 NUDT16L1Q9BRJ7 211 aaKnown RBP12.16□□□□□ -0.46
CSPG4-201ENST00000308508 COL16A1Q07092 1604 aaPredicted RBP12.16□□□□□ -0.46
CSPG4-201ENST00000308508 CCL7P80098 99 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 TMEM45BQ96B21 275 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 PGLYRP3Q96LB9 341 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 HYPMO75409 117 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 PRSS23O95084 383 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 OR4D9Q8NGE8 314 aa12.16□□□□□ -0.46
CSPG4-201ENST00000308508 ITGB4P16144 1822 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 SRD5A2P31213 254 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 RAC3P60763 192 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 PTPMT1Q8WUK0 201 aaPredicted RBP12.15□□□□□ -0.46
CSPG4-201ENST00000308508 ASB5Q8WWX0 329 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 WDR34Q96EX3 536 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 CTSVO60911 334 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 PRSS2P07478 247 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 GABRG2P18507 467 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 ZNF764Q96H86 408 aaPredicted RBP12.15□□□□□ -0.46
CSPG4-201ENST00000308508 PXMP4Q9Y6I8 212 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 SVILO95425 2214 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 CXCL2P19875 107 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 HOGA1Q86XE5 327 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 DYNLRB2Q8TF09 96 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 LRRC61Q9BV99 259 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 WNT16Q9UBV4 365 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 TMEM78Q5T7P6 136 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 ZNF576Q9H609 170 aa12.15□□□□□ -0.46
CSPG4-201ENST00000308508 METTL1Q9UBP6 276 aaKnown RBP12.15□□□□□ -0.46
CSPG4-201ENST00000308508 SLC25A17O43808 307 aa12.15□□□□□ -0.47
CSPG4-201ENST00000308508 ZNF79Q15937 498 aa12.15□□□□□ -0.47
CSPG4-201ENST00000308508 ANKRD37Q7Z713 158 aa12.15□□□□□ -0.47
CSPG4-201ENST00000308508 GGACTQ9BVM4 153 aa12.15□□□□□ -0.47
CSPG4-201ENST00000308508 DDX60LQ5H9U9 1706 aaKnown RBP12.14□□□□□ -0.47
CSPG4-201ENST00000308508 RPL36A-HNRNPH2H7BZ11 118 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 SS18L1O75177 396 aaPredicted RBP12.14□□□□□ -0.47
CSPG4-201ENST00000308508 CBLN4Q9NTU7 201 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 CLN8Q9UBY8 286 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 TUBD1Q9UJT1 453 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 SHISA7A6NL88 538 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 TMEM210A6NLX4 147 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 NMBP08949 121 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 ZNF665Q9H7R5 613 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 F5P12259 2224 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 IGLV3-16A0A075B6K0 115 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 B4E171 279 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 VEGFBP49765 207 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 RPS20P60866 119 aaKnown RBP12.14□□□□□ -0.47
CSPG4-201ENST00000308508 ROM1Q03395 351 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 HSPB7Q9UBY9 170 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 KCNK7Q9Y2U2 307 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 TP53BP1Q12888 1972 aaPredicted RBP12.14□□□□□ -0.47
CSPG4-201ENST00000308508 TRA2AQ13595 282 aaKnown RBP eCLIP12.14□□□□□ -0.47
CSPG4-201ENST00000308508 CHST5Q9GZS9 411 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 FOXJ2Q9P0K8 574 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 AUP1Q9Y679 476 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 NRAPQ86VF7 1730 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 WDR25Q64LD2 544 aaPredicted RBP12.14□□□□□ -0.47
CSPG4-201ENST00000308508 PUSL1Q8N0Z8 303 aaKnown RBP12.14□□□□□ -0.47
CSPG4-201ENST00000308508 ABHD14BQ96IU4 210 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 SF3B5Q9BWJ5 86 aaKnown RBP12.14□□□□□ -0.47
CSPG4-201ENST00000308508 MS4A4AQ96JQ5 239 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 RABAC1Q9UI14 185 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 OR10J6PQ8NGY7 276 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 ZFP64Q9NPA5 681 aa12.14□□□□□ -0.47
CSPG4-201ENST00000308508 F11RQ9Y624 299 aaKnown RBP12.14□□□□□ -0.47
CSPG4-201ENST00000308508 PIGYQ3MUY2 71 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 TCF24Q7RTU0 167 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 MESTQ5EB52 335 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 ZNF600Q6ZNG1 722 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 OR10AC1Q8NH08 325 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 TOGARAM1Q9Y4F4 1720 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 MYO16Q9Y6X6 1858 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 SPTY2D1-AS1A0A0U1RR47 76 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 MDKP21741 143 aaPredicted RBP12.13□□□□□ -0.47
CSPG4-201ENST00000308508 KCNMB2Q9Y691 235 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 TGIF2-C20orf24A0A0A6YYL0 155 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 AGAP20933 346 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 RARRES2Q99969 163 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 ZNF646O15015 1829 aaPredicted RBP12.13□□□□□ -0.47
CSPG4-201ENST00000308508 IGKV3-7A0A075B6H7 116 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 VAX1Q5SQQ9 334 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 SCNM1Q9BWG6 230 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 MRPL16Q9NX20 251 aaKnown RBP12.13□□□□□ -0.47
CSPG4-201ENST00000308508 H0Y980 276 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 ISXQ2M1V0 245 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 IL36RNQ9UBH0 155 aa12.13□□□□□ -0.47
CSPG4-201ENST00000308508 OR4C45A6NMZ5 311 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 C1QTNF9BB2RNN3 333 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 SSPNQ14714 243 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 KCNMB1Q16558 191 aa12.12□□□□□ -0.47
CSPG4-201ENST00000308508 ZNF441Q8N8Z8 693 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms