RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PHF1O43189 567 aaPredicted RBP12.88□□□□□ -0.35
SF3B4-201ENST00000271628 SRSF3P84103 164 aaKnown RBP12.88□□□□□ -0.35
SF3B4-201ENST00000271628 SP6Q3SY56 376 aa12.88□□□□□ -0.35
SF3B4-201ENST00000271628 C5orf24Q7Z6I8 188 aa12.88□□□□□ -0.35
SF3B4-201ENST00000271628 H1FOOQ8IZA3 346 aaPredicted RBP12.88□□□□□ -0.35
SF3B4-201ENST00000271628 OR11L1Q8NGX0 322 aa12.88□□□□□ -0.35
SF3B4-201ENST00000271628 GLYATL2Q8WU03 294 aa12.88□□□□□ -0.35
SF3B4-201ENST00000271628 MRPL24Q96A35 216 aaKnown RBP12.88□□□□□ -0.35
SF3B4-201ENST00000271628 MEGF10Q96KG7 1140 aa12.88□□□□□ -0.35
SF3B4-201ENST00000271628 OR2V2Q96R30 315 aa12.88□□□□□ -0.35
SF3B4-201ENST00000271628 KCNIP1Q9NZI2 227 aa12.88□□□□□ -0.35
SF3B4-201ENST00000271628 ZDHHC8Q9ULC8 765 aa12.88□□□□□ -0.35
SF3B4-201ENST00000271628 TRGV8A0A0C4DH27 118 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 SRRM5B3KS81 715 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 NDUFA2O43678 99 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 HMGN3Q15651 99 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 GGNBP1Q5YKI7 109 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 ZNF818PQ6ZRF7 136 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 IL1F10Q8WWZ1 152 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 MSI2Q96DH6 328 aaKnown RBP12.87□□□□□ -0.35
SF3B4-201ENST00000271628 MRPL37Q9BZE1 423 aaKnown RBP12.87□□□□□ -0.35
SF3B4-201ENST00000271628 HRH4Q9H3N8 390 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 NGBQ9NPG2 151 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 PARP11Q9NR21 331 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 ZFP57Q9NU63 452 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 IL19Q9UHD0 177 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 PRELID3BQ9Y3B1 194 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 POMT1Q9Y6A1 747 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 GATA4P43694 442 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 CEBPDP49716 269 aaPredicted RBP12.87□□□□□ -0.35
SF3B4-201ENST00000271628 TMEM268Q5VZI3 342 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 TBC1D26Q86UD7 250 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 WFDC8Q8IUA0 241 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 FOXRED2Q8IWF2 684 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 ERRFI1Q9UJM3 462 aaPredicted RBP12.87□□□□□ -0.35
SF3B4-201ENST00000271628 TMED3Q9Y3Q3 217 aa12.87□□□□□ -0.35
SF3B4-201ENST00000271628 PIGBOS1A0A0B4J2F0 54 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 OOEPA6NGQ2 149 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 HSPA12AO43301 675 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 SPRY3O43610 288 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 MED6O75586 246 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 TNFSF4P23510 183 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 F2RL1P55085 397 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 UBAC2Q8NBM4 344 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 ST6GALNAC3Q8NDV1 305 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 C18orf12Q96KH6 178 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 TMEM222Q9H0R3 208 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 SPTBN4Q9H254 2564 aa12.86□□□□□ -0.35
SF3B4-201ENST00000271628 IGKV1D-13A0A0B4J2D9 117 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 VSTM5A8MXK1 200 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 E5RGE8 158 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.85□□□□□ -0.35
SF3B4-201ENST00000271628 IGKV1-13P0DP09 117 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 PVALBP20472 110 aaPredicted RBP12.85□□□□□ -0.35
SF3B4-201ENST00000271628 PRDX2P32119 198 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 PAX5Q02548 391 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 COL10A1Q03692 680 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 HFEQ30201 348 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 TMEM88Q6PEY1 159 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 PRR18Q8N4B5 295 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 PPP1R35Q8TAP8 253 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 ERGIC1Q969X5 290 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 TP53RKQ96S44 253 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 NSG2Q9Y328 171 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 DPRXA6NFQ7 191 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 RNASEK-C17orf49H0YIS7 233 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 HEXAP06865 529 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 THBDP07204 575 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 LPAR6P43657 344 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 GABRA2P47869 451 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 TMEM33P57088 247 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 BTNL8Q6UX41 500 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 GCSAMQ8N6F7 178 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 OR10V1Q8NGI7 309 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 GALMQ96C23 342 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 AKR1E2Q96JD6 320 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 TMEM56Q96MV1 263 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 DIRC2Q96SL1 478 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 CCL28Q9NRJ3 127 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 FBXL17Q9UF56 701 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 UBE2J1Q9Y385 318 aaPredicted RBP12.85□□□□□ -0.35
SF3B4-201ENST00000271628 TMEM56-RWDD3S4R434 201 aa12.85□□□□□ -0.35
SF3B4-201ENST00000271628 HSD17B6O14756 317 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 LHBP01229 141 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 CD5P06127 495 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 PSG2P11465 335 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 MUC1P15941 1255 aaPredicted RBP12.84□□□□□ -0.35
SF3B4-201ENST00000271628 CA7P43166 264 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 AESQ08117 197 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 LYZL2Q7Z4W2 148 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 MOGAT3Q86VF5 341 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 LYPD6BQ8NI32 183 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 ITLN1Q8WWA0 313 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 TMEM231Q9H6L2 316 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 MLXQ9UH92 298 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 CHD3Q12873 2000 aaKnown RBP12.84□□□□□ -0.35
SF3B4-201ENST00000271628 TRAV39A0A0B4J263 110 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 DUXBA0A1W2PPF3 345 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 SFTPCP11686 197 aa12.84□□□□□ -0.35
SF3B4-201ENST00000271628 OR3A1P47881 315 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms