RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 Q6ZN92 141 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 OR4P4Q8NGL7 312 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 FAM78BQ5VT40 261 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 DHRS11Q6UWP2 260 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 RFLNBQ8N5W9 214 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 SYT8Q8NBV8 401 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 COL5A3P25940 1745 aaPredicted RBP16.66■□□□□ 0.26
UPF1-201ENST00000262803 LINC00862A6NCI5 91 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 WNT9BO14905 357 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 CHST1O43916 411 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 DXOO77932 396 aaKnown RBP16.66■□□□□ 0.26
UPF1-201ENST00000262803 IGHV3-13P01766 116 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 IGHV3-7P01780 117 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 LIMS1P48059 325 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 SULT1A2P50226 295 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 ELOBQ15370 118 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 ADAD2Q8NCV1 583 aaKnown RBP16.66■□□□□ 0.26
UPF1-201ENST00000262803 OR51B2Q9Y5P1 312 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 C3AR1Q16581 482 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 MS4A10Q96PG2 267 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 LPAR2Q9HBW0 351 aa16.66■□□□□ 0.26
UPF1-201ENST00000262803 TRBV23-1A0A0A0MS06 115 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 ERGP11308 486 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 LRRC75BQ2VPJ9 315 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 AWAT1Q58HT5 328 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 SPRED2Q7Z698 418 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 SFXN3Q9BWM7 321 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 CCL28Q9NRJ3 127 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 MFNGO00587 321 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 FBLIM1Q8WUP2 373 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 SNX22Q96L94 193 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 SCNM1Q9BWG6 230 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 PKIBQ9C010 78 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 HSPB8Q9UJY1 196 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 CDC42EP3Q9UKI2 254 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 J3QR06 171 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 PRSS1P07477 247 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 TRAF4Q9BUZ4 470 aaPredicted RBP16.65■□□□□ 0.26
UPF1-201ENST00000262803 MAP1LC3CQ9BXW4 147 aa16.65■□□□□ 0.26
UPF1-201ENST00000262803 CDRT15L2A8MXV6 281 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 GREM1O60565 184 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 ARG1P05089 322 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 UCP2P55851 309 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 B2MP61769 119 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 FUT5Q11128 374 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 TRAV30A0A087WSZ9 112 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 SPINK4O60575 86 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 PRSS53Q2L4Q9 553 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 MIOXQ9UGB7 285 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 CEP290O15078 2479 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 ACAA1P09110 424 aaPredicted RBP16.64■□□□□ 0.25
UPF1-201ENST00000262803 RPL27AP46776 148 aaKnown RBP16.64■□□□□ 0.25
UPF1-201ENST00000262803 COL10A1Q03692 680 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 LAMTOR1Q6IAA8 161 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 MMD2Q8IY49 270 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 STARD4Q96DR4 205 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 POM121Q96HA1 1249 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 PGLYRP3Q96LB9 341 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 RABAC1Q9UI14 185 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 C19orf57Q0VDD7 668 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 ELOVL5Q9NYP7 299 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 MIA3Q5JRA6 1907 aa16.64■□□□□ 0.25
UPF1-201ENST00000262803 THSD7AQ9UPZ6 1657 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 DHRS7CA6NNS2 312 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 HYPMO75409 117 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 ASAH2BP0C7U1 165 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 CBLN2Q8IUK8 224 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 CKAP5Q14008 2032 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 FGF12P61328 243 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 C16orf82Q7Z2V1 217 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 RAB24Q969Q5 203 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 P2RX4Q99571 388 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 WFDC6Q9BQY6 131 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 ALX4Q9H161 411 aaPredicted RBP16.63■□□□□ 0.25
UPF1-201ENST00000262803 PRSS50Q9UI38 385 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 A0A1W2PNV4 684 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 SEC11BP0C7V7 166 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 LOXL3P58215 753 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 PIGYQ3MUY2 71 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 SAXO1Q8IYX7 474 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 MRPS18BQ9Y676 258 aaKnown RBP16.63■□□□□ 0.25
UPF1-201ENST00000262803 A0A1W2PRD5 423 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 A0A1W2PRF3 423 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 A0A1W2PRM7 423 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 PITX3O75364 302 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 TTRP02766 147 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 CSRP3P50461 194 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 LYZL2Q7Z4W2 148 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 WASHC3Q9Y3C0 194 aa16.63■□□□□ 0.25
UPF1-201ENST00000262803 POLR2AP24928 1970 aaKnown RBP16.62■□□□□ 0.25
UPF1-201ENST00000262803 ECSCRQ19T08 205 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 MRPL30Q8TCC3 161 aaKnown RBP16.62■□□□□ 0.25
UPF1-201ENST00000262803 MYOZ3Q8TDC0 251 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 ISOC2Q96AB3 205 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 GPX7Q96SL4 187 aaPredicted RBP16.62■□□□□ 0.25
UPF1-201ENST00000262803 HELTA6NFD8 242 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 SS18L1O75177 396 aaPredicted RBP16.62■□□□□ 0.25
UPF1-201ENST00000262803 TMEM251Q8N6I4 163 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 GP6Q9HCN6 339 aa16.62■□□□□ 0.25
UPF1-201ENST00000262803 UNC13CQ8NB66 2214 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms