RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 VDAC1P21796 283 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 RNF144BQ7Z419 303 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 OR11H7Q8NGC8 314 aa9.82□□□□□ -0.84
VPS4A-201ENST00000254950 LILRB1Q8NHL6 650 aaPredicted RBP9.82□□□□□ -0.84
VPS4A-201ENST00000254950 TLN1Q9Y490 2541 aaKnown RBP9.82□□□□□ -0.84
VPS4A-201ENST00000254950 AKAP6Q13023 2319 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 A0A0A6YYD4 124 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 CFPP27918 469 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 P2RX3P56373 397 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 BLOC1S1P78537 153 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 FAM76BQ5HYJ3 339 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF561Q8N587 486 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 RPEQ96AT9 228 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 CIB3Q96Q77 187 aaPredicted RBP9.81□□□□□ -0.84
VPS4A-201ENST00000254950 PRR13Q9NZ81 148 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 TAAR5O14804 337 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 LILRA1O75019 489 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 KIR2DS2P43631 304 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 SPANXN5Q5MJ07 72 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 AVPI1Q5T686 147 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 OR52L2PQ8NGH6 319 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 OR1S2Q8NGQ3 325 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 C14orf79Q96F83 325 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 COMMD5Q9GZQ3 224 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 NCOA6Q14686 2063 aaPredicted RBP9.81□□□□□ -0.84
VPS4A-201ENST00000254950 DPRXA6NFQ7 191 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 PSG2P11465 335 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 MOB3BQ86TA1 216 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 ZNRF1Q8ND25 227 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 MSI2Q96DH6 328 aaKnown RBP9.81□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF714Q96N38 554 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 HSD17B10Q99714 261 aaKnown RBP9.81□□□□□ -0.84
VPS4A-201ENST00000254950 CALYQ9NYX4 217 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 OPN4Q9UHM6 478 aa9.81□□□□□ -0.84
VPS4A-201ENST00000254950 MPC2O95563 127 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 RAB32Q13637 225 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 FAM201AQ5SY85 155 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 OR4S2Q8NH73 311 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 EML6Q6ZMW3 1958 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 TSPAN15O95858 294 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 IGHV1-46P01743 117 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 C3orf36Q3SXR2 165 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 NHLRC3Q5JS37 347 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 OR8G2PQ6IF36 304 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 BTNL3Q6UXE8 466 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 HSD17B11Q8NBQ5 300 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 GTF3AQ92664 365 aaKnown RBP9.8□□□□□ -0.84
VPS4A-201ENST00000254950 FAM212BQ9NTI7 297 aaPredicted RBP9.8□□□□□ -0.84
VPS4A-201ENST00000254950 PIPOXQ9P0Z9 390 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 AMMECR1Q9Y4X0 333 aaPredicted RBP9.8□□□□□ -0.84
VPS4A-201ENST00000254950 QRFPP83859 136 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 C4orf17Q53FE4 359 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 PDLIM3Q53GG5 364 aaPredicted RBP9.8□□□□□ -0.84
VPS4A-201ENST00000254950 NUP37Q8NFH4 326 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.8□□□□□ -0.84
VPS4A-201ENST00000254950 CACNG5Q9UF02 275 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 SPTBN4Q9H254 2564 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 LAMA1P25391 3075 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF705EA8MWA4 302 aaPredicted RBP9.8□□□□□ -0.84
VPS4A-201ENST00000254950 IAPPP10997 89 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF250P15622 560 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 F2RP25116 425 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 CEACAM3P40198 252 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 UCP3P55916 312 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 HEXA-AS1Q9H8Q6 139 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 SLC35D1Q9NTN3 355 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 KIAA1456Q9P272 454 aa9.8□□□□□ -0.84
VPS4A-201ENST00000254950 RCL1Q9Y2P8 373 aaKnown RBP9.8□□□□□ -0.84
VPS4A-201ENST00000254950 USF3Q68DE3 2245 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 WISP2O76076 250 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 JTBO76095 146 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 CNIH1O95406 144 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 IGLV1-44P01699 117 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 IGLV3-1P01715 115 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 ZCCHC24Q8N2G6 241 aaKnown RBP9.79□□□□□ -0.84
VPS4A-201ENST00000254950 FAM222BQ8WU58 562 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 NEU4Q8WWR8 484 aaPredicted RBP9.79□□□□□ -0.84
VPS4A-201ENST00000254950 OR8U8P0C7N1 319 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 VMA21Q3ZAQ7 101 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 RNF166Q96A37 237 aaPredicted RBP9.79□□□□□ -0.84
VPS4A-201ENST00000254950 C5orf66Q9H5L9 145 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 STRAPQ9Y3F4 350 aaKnown RBP9.79□□□□□ -0.84
VPS4A-201ENST00000254950 CFAP54Q96N23 3096 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 PIEZO2Q9H5I5 2752 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 GPR37O15354 613 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 CDS2O95674 445 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 IFNA1P01562 189 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 PRSS54Q6PEW0 395 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 RELL2Q8NC24 303 aaPredicted RBP9.79□□□□□ -0.84
VPS4A-201ENST00000254950 ABHD14AQ9BUJ0 271 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 PLSCR3Q9NRY6 295 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 PSENENQ9NZ42 101 aa9.79□□□□□ -0.84
VPS4A-201ENST00000254950 A0A1B0GV50 99 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 POM121CA8CG34 1229 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 SRRM5B3KS81 715 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 NKX6-1P78426 367 aaPredicted RBP9.78□□□□□ -0.84
VPS4A-201ENST00000254950 CLEC2AQ6UVW9 174 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 LYZL2Q7Z4W2 148 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 LURAP1Q96LR2 239 aa9.78□□□□□ -0.84
VPS4A-201ENST00000254950 ZNF251Q9BRH9 671 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms