RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ADGRL3Q9HAR2 1447 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PTPRSQ13332 1948 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SRIP30626 198 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 RPS24P62847 133 aaKnown RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PSG9Q00887 426 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 NKG7Q16617 165 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 PEAR1Q5VY43 1037 aaPredicted RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 ARPC1AQ92747 370 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 NMNAT2Q9BZQ4 307 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 Q9N2K0 584 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 NSD3Q9BZ95 1437 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 TRAV8-2A0A0B4J237 113 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 F5H697 171 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 SIRPB1O00241 398 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 VSIG10L2P0DP72 767 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 DLX1P56177 255 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 APOBEC3HQ6NTF7 200 aaKnown RBP3.11□□□□□ -1.91
SCN1A-221ENST00000641996 KIR2DL5BQ8NHK3 375 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 NEIL3Q8TAT5 605 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 MGLLQ99685 303 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 AUP1Q9Y679 476 aa3.11□□□□□ -1.91
SCN1A-221ENST00000641996 NSG1A0A0A6YYJ2 146 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 LOC102725191A0A1B0GVB3 256 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 FAM24AA6NFZ4 105 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CCKBRP32239 447 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 DIO3P55073 304 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TIGITQ495A1 244 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 FAM27D1Q5T7N8 215 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 THAP8Q8NA92 274 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 PRSS22Q9GZN4 317 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 MED19A0JLT2 244 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TNFSF13O75888 250 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CD160O95971 181 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 FCGR3AP08637 254 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 FGF2P09038 288 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TRGC1P0CF51 173 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 GZMBP10144 247 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 RPL15P61313 204 aaKnown RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 FAM19A5Q7Z5A7 132 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 LINC00596Q86U02 117 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 MEX3DQ86XN8 651 aaKnown RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 C2CD4AQ8NCU7 369 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 OR5AU1Q8NGC0 362 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM125Q96AQ2 219 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 LINC01587Q99440 93 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 KXD1Q9BQD3 176 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 EBPLQ9BY08 206 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 BARX1Q9HBU1 254 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 RIMS3Q9UJD0 308 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 PXMP4Q9Y6I8 212 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 NUP98P52948 1817 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TRAV2A0A0B4J234 112 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 IGHV1-69-2A0A0G2JMI3 117 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 LOC107984640A0A0U1RRK4 108 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CCL24O00175 119 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 RPL11P62913 178 aaKnown RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TVP23CQ96ET8 276 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 PRSS50Q9UI38 385 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 ACOT8O14734 319 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SLC35E2P0CK97 266 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 NKX2-1P43699 371 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 ARIH2OSQ8N7S6 290 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A46Q96AG3 418 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SLC52A3Q9NQ40 469 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 NTN1O95631 604 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 MIPP30301 263 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CRISP3P54108 245 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 AADACL3Q5VUY0 350 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TMEM136Q6ZRR5 245 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 OR52E2Q8NGJ4 325 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 NUS1Q96E22 293 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A51Q9H1U9 297 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 METRNQ9UJH8 293 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CENPEQ02224 2701 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 LOC107984156A0A0G2JMH3 177 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 DKK1O94907 266 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 FBXL22Q6P050 247 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 ARL17AQ8IVW1 177 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 GPR135Q8IZ08 494 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 OR8B3Q8NGG8 313 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 OR1J2Q8NGS2 313 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 GNPNAT1Q96EK6 184 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 FBXL12Q9NXK8 326 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 ZNF257Q9Y2Q1 563 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 COQ4Q9Y3A0 265 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 TFF1P04155 84 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 INHBBP09529 407 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CTLA4P16410 223 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 FXYD6P3P58550 94 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 ELOBQ15370 118 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CDC42EP5Q6NZY7 148 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 LYPD4Q6UWN0 246 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 DNAJC30Q96LL9 226 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CEMIPQ8WUJ3 1361 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 RNASET2O00584 256 aaKnown RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 CDX4O14627 284 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BKO60814 126 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 IGHA2P01877 340 aa3.1□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2BJP06899 126 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms