RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 CST5P28325 142 aaPredicted RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 FUT6P51993 359 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 MFAP4P55083 255 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 PFN3P60673 137 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 THSD4Q6ZMP0 1018 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 KCNG3Q8TAE7 436 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 FGF11Q92914 225 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 RAX2Q96IS3 184 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 SUSD3Q96L08 255 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 TMEM59Q9BXS4 323 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 INSL5Q9Y5Q6 135 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 A0A0G2JLM5 398 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 KBTBD11-OT1A0A1B0GTJ5 212 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 A0A1B0GUS0 222 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 SLC35E2P0CK97 266 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 TCTAP57738 103 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 POM121L1PQ3SYA9 428 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 ZBTB34Q8NCN2 500 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 APOBEC4Q8WW27 367 aaKnown RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 CTNNBIP1Q9NSA3 81 aaPredicted RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 CD207Q9UJ71 328 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 TNRC6CQ9HCJ0 1690 aaKnown RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 TRBV5-5A0A0J9YX44 114 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 GLOD5A6NK44 160 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 DEGS1O15121 323 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 HMGB3O15347 200 aaKnown RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF324O75467 553 aaPredicted RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 TGFAP01135 160 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 CELA3AP09093 270 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 C3orf79P0CE67 100 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 RUNX1Q01196 453 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 BVES-AS1Q5T3Y7 98 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 RFLNBQ8N5W9 214 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 OR5D14Q8NGL3 314 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 KISS1RQ969F8 398 aaPredicted RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 OR2A5Q96R48 311 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 GOLGA2P5Q9HBQ8 144 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF391Q9UJN7 358 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 PSG8Q9UQ74 426 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 HS3ST2Q9Y278 367 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 SELENOKQ9Y6D0 94 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 TEX50A0A1B0GTY4 177 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 ATP1B2P14415 290 aaPredicted RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 LMO1P25800 156 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 NANOS3P60323 173 aaKnown RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 RNFT1Q5M7Z0 435 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF324BQ6AW86 544 aaPredicted RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 SPSB3Q6PJ21 355 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 BHLHA9Q7RTU4 235 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 OR8B12Q8NGG6 310 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 OR10D3Q8NH80 312 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 PLD4Q96BZ4 506 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 COL25A1Q9BXS0 654 aaPredicted RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 MS4A5Q9H3V2 200 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 AKIRIN1Q9H9L7 192 aaPredicted RBP5□□□□□ -1.61
SCN1A-216ENST00000637968 PGPEP1Q9NXJ5 209 aa5□□□□□ -1.61
SCN1A-216ENST00000637968 PHIPQ8WWQ0 1821 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 OR4C46A6NHA9 309 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 SH2D1BO14796 132 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 GNG3P63215 75 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.99□□□□□ -1.61
SCN1A-216ENST00000637968 PRR22Q8IZ63 422 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 ZNRF4Q8WWF5 429 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 DUSP23Q9BVJ7 150 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 PHPT1Q9NRX4 125 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-216ENST00000637968 KCNIP2Q9NS61 270 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 TAAR3PQ9P1P4 343 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 MRM2Q9UI43 246 aaKnown RBP4.99□□□□□ -1.61
SCN1A-216ENST00000637968 BOKQ9UMX3 212 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-216ENST00000637968 SOX21Q9Y651 276 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-216ENST00000637968 TRAV9-1A0A075B6T8 112 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 C9orf118A6NHY6 69 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 C19orf67A6NJJ6 358 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF732B4DXR9 585 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 CLDN7O95471 211 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 TIMP3P35625 211 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 SP6Q3SY56 376 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 PHLDA2Q53GA4 152 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 TMEM97Q5BJF2 176 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 IGF2-ASQ6U949 168 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 PARM1Q6UWI2 310 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 ADAMTSL5Q6ZMM2 481 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 FBXL14Q8N1E6 418 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 SMIM14Q96QK8 99 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 DNAJC25-GNG10A0A024R161 153 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 TRAV8-6A0A0B4J262 113 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 A0A1W2PR80 420 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 NKX2-8O15522 239 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 SNAI2O43623 268 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 CER1O95813 267 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 C8orf89P0DMQ9 161 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 AGERQ15109 404 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 ALKBH6Q3KRA9 238 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 C6orf15Q6UXA7 325 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-216ENST00000637968 TCF23Q7RTU1 214 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 ZNF595Q8IYB9 648 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 OR8B3Q8NGG8 313 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 SCAMP5Q8TAC9 235 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 PPP1R35Q8TAP8 253 aa4.99□□□□□ -1.61
SCN1A-216ENST00000637968 SPSB4Q96A44 273 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms