RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 NDNFQ8TB73 568 aa14.46□□□□□ -0.09
CLN3-247ENST00000636351 MRPL30Q8TCC3 161 aaKnown RBP14.46□□□□□ -0.09
CLN3-247ENST00000636351 PTX4Q96A99 478 aa14.46□□□□□ -0.09
CLN3-247ENST00000636351 RAB3CQ96E17 227 aa14.46□□□□□ -0.09
CLN3-247ENST00000636351 PECRQ9BY49 303 aa14.46□□□□□ -0.09
CLN3-247ENST00000636351 KCNIP1Q9NZI2 227 aa14.46□□□□□ -0.09
CLN3-247ENST00000636351 AK3Q9UIJ7 227 aa14.46□□□□□ -0.09
CLN3-247ENST00000636351 HSF4Q9ULV5 492 aa14.46□□□□□ -0.09
CLN3-247ENST00000636351 TOR1AO14656 332 aa14.45□□□□□ -0.1
CLN3-247ENST00000636351 NOL3O60936 208 aaKnown RBP14.45□□□□□ -0.1
CLN3-247ENST00000636351 CGB3P0DN86 165 aa14.45□□□□□ -0.1
CLN3-247ENST00000636351 CGB7P0DN87 165 aa14.45□□□□□ -0.1
CLN3-247ENST00000636351 RPS19P39019 145 aaKnown RBP14.45□□□□□ -0.1
CLN3-247ENST00000636351 RPL5P46777 297 aaKnown RBP14.45□□□□□ -0.1
CLN3-247ENST00000636351 MOGAT2Q3SYC2 334 aa14.45□□□□□ -0.1
CLN3-247ENST00000636351 ZNF626Q68DY1 528 aa14.45□□□□□ -0.1
CLN3-247ENST00000636351 CLVS1Q8IUQ0 354 aaPredicted RBP14.45□□□□□ -0.1
CLN3-247ENST00000636351 OR10R2Q8NGX6 335 aa14.45□□□□□ -0.1
CLN3-247ENST00000636351 WFDC12Q8WWY7 111 aa14.45□□□□□ -0.1
CLN3-247ENST00000636351 PRDM13Q9H4Q3 707 aa14.45□□□□□ -0.1
CLN3-247ENST00000636351 ETV7Q9Y603 341 aa14.45□□□□□ -0.1
CLN3-247ENST00000636351 FOXI3A8MTJ6 420 aaPredicted RBP14.44□□□□□ -0.1
CLN3-247ENST00000636351 ODF3BA8MYP8 253 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 C12orf77C9JDV5 145 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 SDCBPO00560 298 aaPredicted RBP14.44□□□□□ -0.1
CLN3-247ENST00000636351 ORC5O43913 435 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 GNB3P16520 340 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 RCC1P18754 421 aaPredicted RBP14.44□□□□□ -0.1
CLN3-247ENST00000636351 TMEM50BP56557 158 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 PLAC9Q5JTB6 97 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 LHFPL4Q7Z7J7 247 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 GAPTQ8N292 157 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 OR11H6Q8NGC7 330 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 ZNF596Q8TC21 504 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 C17orf50Q8WW18 174 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 LEAP2Q969E1 77 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 SLC25A46Q96AG3 418 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 PHF21AQ96BD5 680 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 CMSS1Q9BQ75 279 aaKnown RBP14.44□□□□□ -0.1
CLN3-247ENST00000636351 HDHD3Q9BSH5 251 aaPredicted RBP14.44□□□□□ -0.1
CLN3-247ENST00000636351 BEX1Q9HBH7 125 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 ZNF286AQ9HBT8 521 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 C12orf4Q9NQ89 552 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 RHBDL2Q9NX52 303 aa14.44□□□□□ -0.1
CLN3-247ENST00000636351 VWFP04275 2813 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 CMYA5Q8N3K9 4069 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 A0A1B0GUS0 222 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 BTBD17A6NE02 478 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 NPIPB11E5RHQ5 1161 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 C15orf65H3BRN8 121 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 SCGNO76038 276 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 IGHV3-7P01780 117 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 HBZP02008 142 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 CRYBA1P05813 215 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 MELTFP08582 738 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 CD3GP09693 182 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 GNG10P50151 68 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 RAG2P55895 527 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 SCAND1P57086 179 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 CTF1Q16619 201 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 MOB1BQ7L9L4 216 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 OR10A7Q8NGE5 316 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 OR5H6Q8NGV6 325 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 OR4F5Q8NH21 305 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 OR1L1Q8NH94 360 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 SSMEM1Q8WWF3 244 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 CHIAQ9BZP6 476 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 RIMS4Q9H426 269 aaPredicted RBP14.43□□□□□ -0.1
CLN3-247ENST00000636351 LINC00574Q9H8X3 128 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 TAF9BQ9HBM6 251 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 ABRACLQ9P1F3 81 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 ZNRD1Q9P1U0 126 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 GNG12Q9UBI6 72 aa14.43□□□□□ -0.1
CLN3-247ENST00000636351 TBL2Q9Y4P3 447 aaKnown RBP14.43□□□□□ -0.1
CLN3-247ENST00000636351 IGHV3-43A0A0B4J1X8 118 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 RAB27BO00194 218 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 TMEM127O75204 238 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 IGHV3-43DP0DP04 118 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 HIST1H1DP16402 221 aaKnown RBP14.42□□□□□ -0.1
CLN3-247ENST00000636351 CD34P28906 385 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 RELBQ01201 579 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 PLA1AQ53H76 456 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 OLFML2AQ68BL7 652 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 Q6YL49 198 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 DCSTAMPQ9H295 470 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 MBNL3Q9NUK0 354 aaKnown RBP14.42□□□□□ -0.1
CLN3-247ENST00000636351 C1RLQ9NZP8 487 aa14.42□□□□□ -0.1
CLN3-247ENST00000636351 MFNGO00587 321 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 NAPSAO96009 420 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 IGHV4-59P01825 116 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 PAX6P26367 422 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 HTR1DP28221 377 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 PRRX1P54821 245 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 ARFRP1Q13795 201 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 TMEM30BQ3MIR4 351 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 MINOS1Q5TGZ0 78 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 LDLRAD3Q86YD5 345 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 OR10V1Q8NGI7 309 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 OR4P4Q8NGL7 312 aa14.41□□□□□ -0.1
CLN3-247ENST00000636351 OR9G1Q8NH87 305 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms