RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 IL36RNQ9UBH0 155 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 OAZ3Q9UMX2 235 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 CSMD3Q7Z407 3707 aa4.93□□□□□ -1.62
CUX1-220ENST00000607092 IGKV1-9A0A0C4DH69 117 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 OVOL1O14753 267 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 SLC16A6O15403 523 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 MAGEB4O15481 346 aaPredicted RBP4.92□□□□□ -1.62
CUX1-220ENST00000607092 SPINT2O43291 252 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 SULT1B1O43704 296 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 SAP30O75446 220 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 IFNA6P05013 189 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 CD2P06729 351 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 OR8U9P0C7N5 309 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 MYF6P23409 242 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 GDNFP39905 211 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 CAPGP40121 348 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 RPL5P46777 297 aaKnown RBP4.92□□□□□ -1.62
CUX1-220ENST00000607092 RSU1Q15404 277 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 KISS1Q15726 138 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 NHLRC3Q5JS37 347 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 C12orf73Q69YU5 71 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 PYHIN1Q6K0P9 492 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 TMEM179BQ7Z7N9 219 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 SGPP2Q8IWX5 399 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 RDH10Q8IZV5 341 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 PRSS35Q8N3Z0 413 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 Q8N6K4 173 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 OR13A1Q8NGR1 328 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 ADAT3Q96EY9 351 aaPredicted RBP4.92□□□□□ -1.62
CUX1-220ENST00000607092 KCTD7Q96MP8 289 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 OR4C12Q96R67 309 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 S1PR3Q99500 378 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 GPER1Q99527 375 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 TBX5Q99593 518 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 ELOVL1Q9BW60 279 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 CST11Q9H112 138 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 IFT22Q9H7X7 185 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 ING3Q9NXR8 418 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 SMPD3Q9NY59 655 aaPredicted RBP4.92□□□□□ -1.62
CUX1-220ENST00000607092 ZNF107Q9UII5 783 aaPredicted RBP4.92□□□□□ -1.62
CUX1-220ENST00000607092 LINC00527Q9UJ94 153 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 RNF150Q9ULK6 438 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 MYRFQ9Y2G1 1151 aa4.92□□□□□ -1.62
CUX1-220ENST00000607092 EPPK1P58107 5090 aaKnown RBP4.92□□□□□ -1.62
CUX1-220ENST00000607092 IGKV1-12A0A0C4DH73 117 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 SMIM31A0A1B0GVY4 71 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 DAPL1A0PJW8 107 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 ANKRD34BA5PLL1 514 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 DPPA5A6NC42 116 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 SAC3D1A6NKF1 404 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 TMEM212A6NML5 194 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 SDCBPO00560 298 aaPredicted RBP4.91□□□□□ -1.62
CUX1-220ENST00000607092 CA11O75493 328 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 IGKV1D-12P01611 117 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 ALPLP05186 524 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 RAB3AP20336 220 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 VEGFCP49767 419 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 GNG10P50151 68 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 DAPP51397 102 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 ZNF137PP52743 207 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 ADARB1P78563 741 aaKnown RBP4.91□□□□□ -1.62
CUX1-220ENST00000607092 CFHR3Q02985 330 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 TMEM267Q0VDI3 215 aaPredicted RBP4.91□□□□□ -1.62
CUX1-220ENST00000607092 GPR176Q14439 515 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 CDK5R1Q15078 307 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 MPV17LQ2QL34 196 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 DEFB136Q30KP8 78 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 KCTD21Q4G0X4 260 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 C6orf183Q5T699 404 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 ZNF691Q5VV52 312 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 RSBN1Q5VWQ0 802 aaPredicted RBP4.91□□□□□ -1.62
CUX1-220ENST00000607092 MEDAGQ5VYS4 303 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 KDM4DQ6B0I6 523 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 BAIAP2L2Q6UXY1 529 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 C18orf65Q6ZTR6 163 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 ZNF554Q86TJ5 538 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 SBSPONQ8IVN8 264 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 HS3ST5Q8IZT8 346 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 Q8N9W7 124 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 OR5D18Q8NGL1 313 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 RFESDQ8TAC1 157 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 MYOZ3Q8TDC0 251 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 RTN4IP1Q8WWV3 396 aaPredicted RBP4.91□□□□□ -1.62
CUX1-220ENST00000607092 ARL11Q969Q4 196 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 ST6GALNAC6Q969X2 333 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 FLYWCH2Q96CP2 140 aaKnown RBP4.91□□□□□ -1.62
CUX1-220ENST00000607092 DUX3Q96PT4 197 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 SPATA25Q9BR10 227 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 DPCDQ9BVM2 203 aaPredicted RBP4.91□□□□□ -1.62
CUX1-220ENST00000607092 MRPS26Q9BYN8 205 aaKnown RBP4.91□□□□□ -1.62
CUX1-220ENST00000607092 GABARAPL1Q9H0R8 117 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 PPIL3Q9H2H8 161 aaKnown RBP4.91□□□□□ -1.62
CUX1-220ENST00000607092 ISYNA1Q9NPH2 558 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 IMPAD1Q9NX62 359 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 GFOD1Q9NXC2 390 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 IL36GQ9NZH8 169 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 KIAA1456Q9P272 454 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 GNG12Q9UBI6 72 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 ORC6Q9Y5N6 252 aa4.91□□□□□ -1.62
CUX1-220ENST00000607092 A0A087WXM4 84 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms