RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 OR8B2Q96RD0 313 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 URM1Q9BTM9 101 aaKnown RBP7.16□□□□□ -1.26
TRIM28-214ENST00000600840 FAAP24Q9BTP7 215 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 DPCDQ9BVM2 203 aaPredicted RBP7.16□□□□□ -1.26
TRIM28-214ENST00000600840 PECRQ9BY49 303 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 CHST6Q9GZX3 395 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 LINC00574Q9H8X3 128 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 SPACA1Q9HBV2 294 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 C19orf12Q9NSK7 152 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 COMMD3Q9UBI1 195 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 SLC25A10Q9UBX3 287 aaPredicted RBP7.16□□□□□ -1.26
TRIM28-214ENST00000600840 ZNF221Q9UK13 617 aa7.16□□□□□ -1.26
TRIM28-214ENST00000600840 ELF5Q9UKW6 265 aaPredicted RBP7.16□□□□□ -1.26
TRIM28-214ENST00000600840 TRBV6-6A0A0A6YYG2 114 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 A0A0A6YYH2 397 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 A6NJ64 397 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 CTDSPLO15194 276 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 XRCC3O43542 346 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 NDUFB3O43676 98 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 ORC5O43913 435 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 CA11O75493 328 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 CCNKO75909 580 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 SNAPC5O75971 98 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 RNASE1P07998 156 aaKnown RBP7.15□□□□□ -1.26
TRIM28-214ENST00000600840 MMP9P14780 707 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 HIST1H1DP16402 221 aaKnown RBP7.15□□□□□ -1.26
TRIM28-214ENST00000600840 MDKP21741 143 aaPredicted RBP7.15□□□□□ -1.26
TRIM28-214ENST00000600840 CDK2P24941 298 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 MNDAP41218 407 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 KCNJ3P48549 501 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 RAG2P55895 527 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 AESQ08117 197 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 GRK1Q15835 563 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 CDNFQ49AH0 187 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 SLC35E4Q6ICL7 350 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 FIP1L1Q6UN15 594 aaKnown RBP7.15□□□□□ -1.26
TRIM28-214ENST00000600840 ZNF497Q6ZNH5 498 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 Q6ZTK2 550 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 C9orf139Q6ZV77 190 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 NRARPQ7Z6K4 114 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 TPRX1Q8N7U7 411 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 SAMD12Q8N8I0 201 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 CREB3L1Q96BA8 519 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 TBX15Q96SF7 602 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 ATG5Q9H1Y0 275 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 PPA2Q9H2U2 334 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 TNFRSF19Q9NS68 423 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 MBNL3Q9NUK0 354 aaKnown RBP7.15□□□□□ -1.26
TRIM28-214ENST00000600840 CLN8Q9UBY8 286 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 GLS2Q9UI32 602 aa7.15□□□□□ -1.26
TRIM28-214ENST00000600840 RPUSD1Q9UJJ7 312 aaKnown RBP7.15□□□□□ -1.26
TRIM28-214ENST00000600840 UBE2QL1A1L167 161 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 MEIOCA2RUB1 952 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 METTL21EPA6NDL7 271 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 NKX6-3A6NJ46 265 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 C17orf98A8MV24 154 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 MCRIP1C9JLW8 97 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 H3BUI4 141 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 LYRM1O43325 122 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 HOXA3O43365 443 aaPredicted RBP7.14□□□□□ -1.27
TRIM28-214ENST00000600840 GSTZ1O43708 216 aaPredicted RBP7.14□□□□□ -1.27
TRIM28-214ENST00000600840 SSX5O60225 188 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 ECDO95905 644 aaPredicted RBP7.14□□□□□ -1.27
TRIM28-214ENST00000600840 PPIAL4GP0DN37 164 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 P2RX3P56373 397 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 AP3S2P59780 193 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 RELBQ01201 579 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 MEF2CQ06413 473 aaPredicted RBP7.14□□□□□ -1.27
TRIM28-214ENST00000600840 ZNF273Q14593 569 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 FAM189A2Q15884 450 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 BAK1Q16611 211 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 PAN3Q58A45 887 aaKnown RBP7.14□□□□□ -1.27
TRIM28-214ENST00000600840 LRRC10Q5BKY1 277 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 UBE2NLQ5JXB2 153 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 ATAD3CQ5T2N8 411 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 BTNL3Q6UXE8 466 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 RBMS3Q6XE24 437 aaKnown RBP7.14□□□□□ -1.27
TRIM28-214ENST00000600840 NLRC3Q7RTR2 1065 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 C5orf24Q7Z6I8 188 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 SNX29P2Q8IUI4 249 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 Q8N7P7 452 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 ASCC1Q8N9N2 400 aaKnown RBP7.14□□□□□ -1.27
TRIM28-214ENST00000600840 TMEM185AQ8NFB2 350 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 OR4M1Q8NGD0 313 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 MRPL30Q8TCC3 161 aaKnown RBP7.14□□□□□ -1.27
TRIM28-214ENST00000600840 TNFRSF14Q92956 283 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 RAB3CQ96E17 227 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 ABHD1Q96SE0 405 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 PRDM13Q9H4Q3 707 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 AUNIPQ9H7T9 357 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 ZMAT3Q9HA38 289 aaKnown RBP7.14□□□□□ -1.27
TRIM28-214ENST00000600840 EXTL2Q9UBQ6 330 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 AK3Q9UIJ7 227 aa7.14□□□□□ -1.27
TRIM28-214ENST00000600840 TRBV23-1A0A0A0MS06 115 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 CENPVL3A0A0U1RRI6 287 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 FAM240BA0A1B0GVZ2 78 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 ODAMA1E959 279 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 FAM172BPA6NC97 362 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 NAP1L6A6NFF2 107 aa7.13□□□□□ -1.27
TRIM28-214ENST00000600840 POM121CA8CG34 1229 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms