RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 DGCR2P98153 550 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 PAX5Q02548 391 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 GPR50Q13585 617 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 MPV17LQ2QL34 196 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 CXorf66Q5JRM2 361 aaPredicted RBP13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 SYT6Q5T7P8 510 aaPredicted RBP13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 GLIPR1L1Q6UWM5 242 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 LINC00596Q86U02 117 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 TGIF2LXQ8IUE1 241 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 COMMD1Q8N668 190 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 Q8N9W7 124 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 OR1L1Q8NH94 360 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 P2RX4Q99571 388 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 BANF2Q9H503 90 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 IFT22Q9H7X7 185 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 DCLRE1BQ9H816 532 aa13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 MRPS28Q9Y2Q9 187 aaKnown RBP13.83□□□□□ -0.2
SHKBP1-223ENST00000600552 TRAV8-7A0A075B6U6 113 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 C12orf77C9JDV5 145 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 ORC5O43913 435 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 ZNF780AO75290 641 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 MAS1P04201 325 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 VHLP40337 213 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 LUMP51884 338 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 EBI3Q14213 229 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 LRRC36Q1X8D7 754 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 NHLRC3Q5JS37 347 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 RAB12Q6IQ22 244 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 ZNF497Q6ZNH5 498 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 IZUMO1Q8IYV9 350 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 LINC00311Q8N616 119 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 OR52M1Q8NGK5 317 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 SMIM19Q96E16 107 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 S1PR3Q99500 378 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 ABCG5Q9H222 651 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 LIN7CQ9NUP9 197 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 SMPD3Q9NY59 655 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 EXOSC1Q9Y3B2 195 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 PEX16Q9Y5Y5 336 aa13.82□□□□□ -0.2
SHKBP1-223ENST00000600552 NBEAL2Q6ZNJ1 2754 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 UBE2QL1A1L167 161 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 MYF6P23409 242 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 F2RL1P55085 397 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 C5orf24Q7Z6I8 188 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 Q8N6K4 173 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 TMEM80Q96HE8 168 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 OR14A2Q96R54 314 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 B9D2Q9BPU9 175 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 HSPB9Q9BQS6 159 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 SELENOIQ9C0D9 397 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 PLSCR3Q9NRY6 295 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 COL7A1Q02388 2944 aa13.81□□□□□ -0.2
SHKBP1-223ENST00000600552 IRGMA1A4Y4 181 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 RRP9O43818 475 aaKnown RBP13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 CRTAPO75718 401 aaPredicted RBP13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 HBZP02008 142 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 SLC2A2P11168 524 aaPredicted RBP13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 IGFBP3P17936 291 aaPredicted RBP13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 VDAC1P21796 283 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 CD1BP29016 333 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 SLC6A1P30531 599 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 ZNF134P52741 427 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 MED21Q13503 144 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 GPR176Q14439 515 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 Q499Y3 187 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 CT45A1Q5HYN5 189 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 AWAT2Q6E213 333 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 CT45A3Q8NHU0 189 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 ST6GALNAC6Q969X2 333 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 CYYR1Q96J86 154 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 PRR25Q96S07 402 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 GON7Q9BXV9 100 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 SPACA1Q9HBV2 294 aa13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 DIMT1Q9UNQ2 313 aaKnown RBP13.8□□□□□ -0.2
SHKBP1-223ENST00000600552 DNAH9Q9NYC9 4486 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 TRBV5-5A0A0J9YX44 114 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 H0YHG0 523 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 RCC1P18754 421 aaPredicted RBP13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 SOX6P35712 828 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 ECI1P42126 302 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 C6orf183Q5T699 404 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 DMKNQ6E0U4 476 aaPredicted RBP13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 SLC25A48Q6ZT89 311 aaKnown RBP13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 TMEM104Q8NE00 496 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 OR5M8Q8NGP6 311 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 OR8U1Q8NH10 309 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 FAM46BQ96A09 425 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 RAB9BQ9NP90 201 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 OR2S2Q9NQN1 319 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 WSB1Q9Y6I7 421 aa13.79□□□□□ -0.2
SHKBP1-223ENST00000600552 ADARB1P78563 741 aaKnown RBP13.78□□□□□ -0.2
SHKBP1-223ENST00000600552 FOXE3Q13461 319 aa13.78□□□□□ -0.2
SHKBP1-223ENST00000600552 YIF1BQ5BJH7 314 aa13.78□□□□□ -0.2
SHKBP1-223ENST00000600552 NKAPLQ5M9Q1 402 aa13.78□□□□□ -0.2
SHKBP1-223ENST00000600552 C8orf31Q8N9H6 132 aa13.78□□□□□ -0.2
SHKBP1-223ENST00000600552 OR52L2PQ8NGH6 319 aa13.78□□□□□ -0.2
SHKBP1-223ENST00000600552 GGHQ92820 318 aa13.78□□□□□ -0.2
SHKBP1-223ENST00000600552 KCTD7Q96MP8 289 aa13.78□□□□□ -0.2
SHKBP1-223ENST00000600552 OR5B12Q96R08 314 aa13.78□□□□□ -0.2
SHKBP1-223ENST00000600552 TAF9BQ9HBM6 251 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms