RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 OR14A2Q96R54 314 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 MCRIP2Q9BUT9 160 aaKnown RBP7.75□□□□□ -1.17
VRK3-216ENST00000599342 GON7Q9BXV9 100 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 ZFP57Q9NU63 452 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 LIN7CQ9NUP9 197 aaKnown RBP7.75□□□□□ -1.17
VRK3-216ENST00000599342 ETAA1Q9NY74 926 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 GNG12Q9UBI6 72 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 LINC00527Q9UJ94 153 aa7.75□□□□□ -1.17
VRK3-216ENST00000599342 TRAV8-7A0A075B6U6 113 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 A0A1W2PPK0 400 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 EFCAB10A6NFE3 127 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 AP4M1O00189 453 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 MYL12BO14950 172 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 RRP9O43818 475 aaKnown RBP7.74□□□□□ -1.17
VRK3-216ENST00000599342 GPX5O75715 221 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 MOSP00540 346 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 MT-ND4P03905 459 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 MAS1P04201 325 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 HOXD3P31249 432 aaPredicted RBP7.74□□□□□ -1.17
VRK3-216ENST00000599342 CAPGP40121 348 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 THBS3P49746 956 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 ST3GAL4Q11206 333 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 EBI3Q14213 229 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 DEFB121Q5J5C9 76 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 RAB12Q6IQ22 244 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 TEX38Q6PEX7 206 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 TRAT1Q6PIZ9 186 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 ETV3LQ6ZN32 361 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 C8orf86Q6ZUL3 223 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 PACRGLQ8N7B6 248 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 NKAIN3Q8N8D7 197 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 OR4K15Q8NH41 348 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 THRSPQ92748 146 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 GGHQ92820 318 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 EAF1Q96JC9 268 aaPredicted RBP7.74□□□□□ -1.17
VRK3-216ENST00000599342 ABCG5Q9H222 651 aa7.74□□□□□ -1.17
VRK3-216ENST00000599342 CNOT2Q9NZN8 540 aaKnown RBP7.74□□□□□ -1.17
VRK3-216ENST00000599342 RCC2Q9P258 522 aaKnown RBP7.74□□□□□ -1.17
VRK3-216ENST00000599342 TRBV5-7A0A0A0MS05 114 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 C12orf77C9JDV5 145 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 K7EIL1 84 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 CA11O75493 328 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 CRTAPO75718 401 aaPredicted RBP7.73□□□□□ -1.17
VRK3-216ENST00000599342 MGMTP16455 207 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 CELP19835 753 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 MAPK3P27361 379 aaPredicted RBP7.73□□□□□ -1.17
VRK3-216ENST00000599342 CD1BP29016 333 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 MYCNOSP40205 109 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 GPR12P47775 334 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 WNT4P56705 351 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 RPS11P62280 158 aaKnown RBP eCLIP7.73□□□□□ -1.17
VRK3-216ENST00000599342 EGFEM1PQ0D2K5 195 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 DOC2BQ14184 412 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 CXorf66Q5JRM2 361 aaPredicted RBP7.73□□□□□ -1.17
VRK3-216ENST00000599342 UNQ9370/PRO34162Q6UXP9 181 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 SLC25A48Q6ZT89 311 aaKnown RBP7.73□□□□□ -1.17
VRK3-216ENST00000599342 ZNF695Q8IW36 515 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 CDH26Q8IXH8 852 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 C8orf59Q8N0T1 100 aaPredicted RBP7.73□□□□□ -1.17
VRK3-216ENST00000599342 Q8N9W7 124 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 OR8H1Q8NGG4 311 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 OR10V1Q8NGI7 309 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 DERL3Q96Q80 235 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 RASL11BQ9BPW5 248 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 SELENOIQ9C0D9 397 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 BANF2Q9H503 90 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 PEX16Q9Y5Y5 336 aa7.73□□□□□ -1.17
VRK3-216ENST00000599342 FAM90A10PA6NDY2 464 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 FAM90A7PA6NKC0 464 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 FAM90A23PA8MXZ1 464 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 SLC31A2O15432 143 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 HBZP02008 142 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 FUT3P21217 361 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 VDAC1P21796 283 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 ZNF137PP52743 207 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 RAB25P57735 213 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 KRTAP10-11P60412 298 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 ADARB1P78563 741 aaKnown RBP7.72□□□□□ -1.17
VRK3-216ENST00000599342 DCTN2Q13561 401 aaKnown RBP7.72□□□□□ -1.17
VRK3-216ENST00000599342 GPR50Q13585 617 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 RCN1Q15293 331 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 PNLIPRP3Q17RR3 467 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 FAM53AQ6NSI3 398 aaPredicted RBP7.72□□□□□ -1.17
VRK3-216ENST00000599342 C18orf65Q6ZTR6 163 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 AHSA2Q719I0 299 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 Q8N6K4 173 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 ZNF485Q8NCK3 441 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 ZNF439Q8NDP4 499 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 TMEM104Q8NE00 496 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 OR1L1Q8NH94 360 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 TFAP2CQ92754 450 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 ST6GALNAC6Q969X2 333 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 S1PR3Q99500 378 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 UQCC2Q9BRT2 126 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 CST11Q9H112 138 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 OR2S2Q9NQN1 319 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 KCNIP1Q9NZI2 227 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 GHRLQ9UBU3 117 aa7.72□□□□□ -1.17
VRK3-216ENST00000599342 ZMAT5Q9UDW3 170 aaKnown RBP7.72□□□□□ -1.17
VRK3-216ENST00000599342 ERGIC3Q9Y282 383 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms