RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 TRAPPC2LQ9UL33 140 aa11.99□□□□□ -0.49
LIG1-215ENST00000597901 LSM2Q9Y333 95 aaKnown RBP11.99□□□□□ -0.49
LIG1-215ENST00000597901 TET2Q6N021 2002 aaPredicted RBP11.98□□□□□ -0.49
LIG1-215ENST00000597901 IGHV3-43A0A0B4J1X8 118 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 UBE2QL1A1L167 161 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 C12orf77C9JDV5 145 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 CCRL2O00421 344 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 IGHV3-43DP0DP04 118 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 AQP4P55087 323 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 ZNF816Q0VGE8 651 aaPredicted RBP11.98□□□□□ -0.49
LIG1-215ENST00000597901 GPR50Q13585 617 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 IRF3Q14653 427 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 FAM27D1Q5T7N8 215 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 CEACAM19Q7Z692 300 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 MOB3BQ86TA1 216 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 LRRTM1Q86UE6 522 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 Q96M66 194 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 TMED9Q9BVK6 235 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 DUSP21Q9H596 190 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 MOB4Q9Y3A3 225 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 TPRKBQ9Y3C4 175 aa11.98□□□□□ -0.49
LIG1-215ENST00000597901 IGHV1-3A0A0C4DH29 117 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 TCRBV4S1A1TA0A5B7 111 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 SPINT2O43291 252 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 CA11O75493 328 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 SC5DO75845 299 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 CD37P11049 281 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 TMEM11P17152 192 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 RCC1P18754 421 aaPredicted RBP11.97□□□□□ -0.49
LIG1-215ENST00000597901 SRMP19623 302 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 REG1BP48304 166 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 SLC35A2P78381 396 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 EBI3Q14213 229 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 MED22Q15528 200 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 BEAN1Q3B7T3 259 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 C1orf100Q5SVJ3 147 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 SAMD5Q5TGI4 173 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 GLT8D1Q68CQ7 371 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 C10orf99Q6UWK7 81 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 PHYHIPQ92561 330 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 ST6GALNAC6Q969X2 333 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 FAM46BQ96A09 425 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 CYYR1Q96J86 154 aa11.97□□□□□ -0.49
LIG1-215ENST00000597901 A0A1W2PRX2 142 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 HSD17B6O14756 317 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 IGKV1D-33P01593 117 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 IGKV1-33P01594 117 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 HBZP02008 142 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 MYF6P23409 242 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 ZNF134P52741 427 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 Q3ZCU0 254 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 CT45A1Q5HYN5 189 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 C6orf183Q5T699 404 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 OR1L1Q8NH94 360 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 CT45A3Q8NHU0 189 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 EAF1Q96JC9 268 aaPredicted RBP11.96□□□□□ -0.49
LIG1-215ENST00000597901 CST11Q9H112 138 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 RAB9BQ9NP90 201 aa11.96□□□□□ -0.49
LIG1-215ENST00000597901 IGHV3-72A0A0B4J1Y9 119 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 SLC31A2O15432 143 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 FGF16O43320 207 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 PDCD6O75340 191 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 MPIG6BO95866 241 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 UBBP0CG47 229 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 VSIG8P0DPA2 414 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 IL3RAP26951 378 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 TPBGQ13641 420 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 HSD17B12Q53GQ0 312 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 OXLD1Q5BKU9 147 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 KPRPQ5T749 579 aaPredicted RBP11.95□□□□□ -0.5
LIG1-215ENST00000597901 OR10K2Q6IF99 312 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 TRAT1Q6PIZ9 186 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 C5orf24Q7Z6I8 188 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 PRR18Q8N4B5 295 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 C5orf56Q8N8D9 126 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 ZNF439Q8NDP4 499 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 WFDC9Q8NEX5 89 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 TMEM203Q969S6 136 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 TAF9BQ9HBM6 251 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 KCNIP1Q9NZI2 227 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 GNG12Q9UBI6 72 aa11.95□□□□□ -0.5
LIG1-215ENST00000597901 TSSC4Q9Y5U2 329 aaPredicted RBP11.95□□□□□ -0.5
LIG1-215ENST00000597901 NOTCH1P46531 2555 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 UCHL1P09936 223 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 TMEM30BQ3MIR4 351 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 RBM48Q5RL73 367 aaKnown RBP11.94□□□□□ -0.5
LIG1-215ENST00000597901 LIPKQ5VXJ0 399 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 STEAP3Q658P3 488 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 TMEM91Q6ZNR0 172 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 SLC25A48Q6ZT89 311 aaKnown RBP11.94□□□□□ -0.5
LIG1-215ENST00000597901 OR4X2Q8NGF9 303 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 OR10V1Q8NGI7 309 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 OR2T10Q8NGZ9 312 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 MRPL30Q8TCC3 161 aaKnown RBP11.94□□□□□ -0.5
LIG1-215ENST00000597901 RTN4IP1Q8WWV3 396 aaPredicted RBP11.94□□□□□ -0.5
LIG1-215ENST00000597901 UFD1Q92890 307 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 NEDD4LQ96PU5 975 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 FAAP24Q9BTP7 215 aa11.94□□□□□ -0.5
LIG1-215ENST00000597901 MBNL3Q9NUK0 354 aaKnown RBP11.94□□□□□ -0.5
LIG1-215ENST00000597901 PSMB11A5LHX3 300 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms