RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 CRHBPP24387 322 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 VHLP40337 213 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 LOXL3P58215 753 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 EMX1Q04741 257 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-203ENST00000593582 HES1Q14469 280 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 TMEM30BQ3MIR4 351 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 FBLN7Q53RD9 439 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 TRAT1Q6PIZ9 186 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 PRSS48Q7RTY5 328 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 GAPTQ8N292 157 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 C8orf31Q8N9H6 132 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 OR4K15Q8NH41 348 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 WIPF2Q8TF74 440 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-203ENST00000593582 TMEM203Q969S6 136 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 GFOD1Q9NXC2 390 aa12.19□□□□□ -0.46
TRIM28-203ENST00000593582 UBE2QL1A1L167 161 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 CCRL2O00421 344 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 HSD17B6O14756 317 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 KCNAB3O43448 404 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 PDCD6O75340 191 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 OPN1MWP04001 364 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 GAPDHP04406 335 aaKnown RBP12.18□□□□□ -0.46
TRIM28-203ENST00000593582 LPLP06858 475 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 SNRNP70P08621 437 aaKnown RBP12.18□□□□□ -0.46
TRIM28-203ENST00000593582 UCHL1P09936 223 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 OPN1MW2P0DN77 364 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 OPN1MW3P0DN78 364 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 PSMA1P25786 263 aaKnown RBP12.18□□□□□ -0.46
TRIM28-203ENST00000593582 IL3RAP26951 378 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 TPBGQ13641 420 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 DIAPH2-AS1Q14236 149 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 TRAM1Q15629 374 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 NSUN5P1Q3KNT7 163 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 Q3ZCU0 254 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 C1orf100Q5SVJ3 147 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 SIGIRRQ6IA17 410 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 CENPVQ7Z7K6 275 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-203ENST00000593582 NDUFA11Q86Y39 141 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 LYG1Q8N1E2 194 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 PRR18Q8N4B5 295 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 LINC00311Q8N616 119 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 OR5AU1Q8NGC0 362 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 KCNG3Q8TAE7 436 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 CNBD2Q96M20 576 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 CITED2Q99967 270 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-203ENST00000593582 ISYNA1Q9NPH2 558 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 GNG12Q9UBI6 72 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 MOB4Q9Y3A3 225 aa12.18□□□□□ -0.46
TRIM28-203ENST00000593582 IGHV3-43A0A0B4J1X8 118 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 SLC22A1O15245 554 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 HBZP02008 142 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 AMY1AP04745 511 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 AMY2AP04746 511 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 IGHV3-43DP0DP04 118 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 VSIG8P0DPA2 414 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 TMEM11P17152 192 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 RCC1P18754 421 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-203ENST00000593582 HTR2CP28335 458 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 ZNF816Q0VGE8 651 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-203ENST00000593582 MLLT11Q13015 90 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-203ENST00000593582 C9orf152Q5JTZ5 239 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 NKAPLQ5M9Q1 402 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 NEDD4LQ96PU5 975 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 TMEM59Q9BXS4 323 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 KCNIP1Q9NZI2 227 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 BLOC1S6Q9UL45 172 aa12.17□□□□□ -0.46
TRIM28-203ENST00000593582 NOTCH1P46531 2555 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 IGHV1-3A0A0C4DH29 117 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 ARL6IP5O75915 188 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 IGKV1D-33P01593 117 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 IGKV1-33P01594 117 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 CPEP16870 476 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 REG1BP48304 166 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 RPS25P62851 125 aaKnown RBP12.16□□□□□ -0.46
TRIM28-203ENST00000593582 RPS27AP62979 156 aaKnown RBP12.16□□□□□ -0.46
TRIM28-203ENST00000593582 HNF4GQ14541 408 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 OR10K2Q6IF99 312 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 TMEM91Q6ZNR0 172 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 MOB3BQ86TA1 216 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 ZNF554Q86TJ5 538 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 OR4F17Q8NGA8 305 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 OR6M1Q8NGM8 313 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 OR1L1Q8NH94 360 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 OR4F4Q96R69 305 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 MGLLQ99685 303 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 TAF9BQ9HBM6 251 aa12.16□□□□□ -0.46
TRIM28-203ENST00000593582 MBNL3Q9NUK0 354 aaKnown RBP12.16□□□□□ -0.46
TRIM28-203ENST00000593582 SH2D7A6NKC9 451 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-203ENST00000593582 BPNT1O95861 308 aa12.15□□□□□ -0.46
TRIM28-203ENST00000593582 CD37P11049 281 aa12.15□□□□□ -0.46
TRIM28-203ENST00000593582 MAP2K4P45985 399 aa12.15□□□□□ -0.46
TRIM28-203ENST00000593582 STEAP3Q658P3 488 aa12.15□□□□□ -0.46
TRIM28-203ENST00000593582 FAM53AQ6NSI3 398 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-203ENST00000593582 SLC25A48Q6ZT89 311 aaKnown RBP12.15□□□□□ -0.46
TRIM28-203ENST00000593582 OR10V1Q8NGI7 309 aa12.15□□□□□ -0.46
TRIM28-203ENST00000593582 RTN4IP1Q8WWV3 396 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-203ENST00000593582 R3HDM4Q96D70 268 aa12.15□□□□□ -0.46
TRIM28-203ENST00000593582 PLGRKTQ9HBL7 147 aa12.15□□□□□ -0.46
TRIM28-203ENST00000593582 OR2S2Q9NQN1 319 aa12.15□□□□□ -0.46
TRIM28-203ENST00000593582 RAB26Q9ULW5 256 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms