RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 MAGEB3O15480 346 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 GPX5O75715 221 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 OR7C1O76099 320 aaPredicted RBP9.16□□□□□ -0.94
CLIP3-204ENST00000590559 MOSP00540 346 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 IGFBP3P17936 291 aaPredicted RBP9.16□□□□□ -0.94
CLIP3-204ENST00000590559 PPIFP30405 207 aaKnown RBP9.16□□□□□ -0.94
CLIP3-204ENST00000590559 SOX2P48431 317 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 MPV17LQ2QL34 196 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 CXorf66Q5JRM2 361 aaPredicted RBP9.16□□□□□ -0.94
CLIP3-204ENST00000590559 RPL22L1Q6P5R6 122 aaKnown RBP9.16□□□□□ -0.94
CLIP3-204ENST00000590559 CBR4Q8N4T8 237 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 OR8H1Q8NGG4 311 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 OR5M8Q8NGP6 311 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 GPR148Q8TDV2 347 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 C4orf3Q8WVX3 66 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 TMEM106AQ96A25 262 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 PRR25Q96S07 402 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 METTL9Q9H1A3 318 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 TMEM138Q9NPI0 162 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 GMPPBQ9Y5P6 360 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 SIRT4Q9Y6E7 314 aaPredicted RBP9.16□□□□□ -0.94
CLIP3-204ENST00000590559 SORL1Q92673 2214 aa9.16□□□□□ -0.94
CLIP3-204ENST00000590559 IGHV3-43A0A0B4J1X8 118 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 A0A1W2PP11 408 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 C12orf77C9JDV5 145 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 I3L521 148 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 OGG1O15527 345 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 TXNL1O43396 289 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 IGHV3-43DP0DP04 118 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 ZNF93P35789 620 aaPredicted RBP9.15□□□□□ -0.94
CLIP3-204ENST00000590559 RUNX1Q01196 453 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 CT45A1Q5HYN5 189 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 ASPHD1Q5U4P2 390 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 CT45A3Q8NHU0 189 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 UBALD1Q8TB05 177 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 ORAI1Q96D31 301 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 Q96MT0 163 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 SLC29A1Q99808 456 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 CHCHD6Q9BRQ6 235 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 FAM192AQ9GZU8 254 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 ING4Q9UNL4 249 aa9.15□□□□□ -0.94
CLIP3-204ENST00000590559 TENM2Q9NT68 2774 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 EPPK1P58107 5090 aaKnown RBP9.14□□□□□ -0.95
CLIP3-204ENST00000590559 TRBV5-5A0A0J9YX44 114 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 LOC100130705A0A1B0GUX0 176 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 MAGEA13PA6NCF6 341 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 ZNF780AO75290 641 aaPredicted RBP9.14□□□□□ -0.95
CLIP3-204ENST00000590559 WBP4O75554 376 aaKnown RBP9.14□□□□□ -0.95
CLIP3-204ENST00000590559 SC5DO75845 299 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 LALBAP00709 142 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 IGLV1-40P01703 118 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 CD2P06729 351 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 SERPINA2P20848 420 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 CHATP28329 748 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 SOX6P35712 828 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 ETV1P50549 477 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 RPS11P62280 158 aaKnown RBP eCLIP9.14□□□□□ -0.95
CLIP3-204ENST00000590559 TMEM30BQ3MIR4 351 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 DDI2Q5TDH0 399 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 STEAP3Q658P3 488 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 LYPD6Q86Y78 171 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 CCDC107Q8WV48 283 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 KCTD7Q96MP8 289 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 RASL11BQ9BPW5 248 aa9.14□□□□□ -0.95
CLIP3-204ENST00000590559 PAK1IP1Q9NWT1 392 aaPredicted RBP9.14□□□□□ -0.95
CLIP3-204ENST00000590559 RPL36Q9Y3U8 105 aaKnown RBP9.14□□□□□ -0.95
CLIP3-204ENST00000590559 FAM90A10PA6NDY2 464 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 SEC14L6B5MCN3 397 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 C3orf84H3BNL1 204 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 AIPO00170 330 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 DYNC1I1O14576 645 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 LANCL1O43813 399 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 RRP9O43818 475 aaKnown RBP9.13□□□□□ -0.95
CLIP3-204ENST00000590559 CIB2O75838 187 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 CSTBP04080 98 aaKnown RBP9.13□□□□□ -0.95
CLIP3-204ENST00000590559 IL3RAP26951 378 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 BDKRB2P30411 391 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 RAB25P57735 213 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 SMN1Q16637 294 aaKnown RBP9.13□□□□□ -0.95
CLIP3-204ENST00000590559 OR2G6Q5TZ20 316 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 ZFP1Q6P2D0 407 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 ODF3L1Q8IXM7 274 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 ZNF491Q8N8L2 437 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 ZNF485Q8NCK3 441 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 OR11H1Q8NG94 326 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 SMIM19Q96E16 107 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 CYYR1Q96J86 154 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 UBE2E2Q96LR5 201 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 ZNF184Q99676 751 aaPredicted RBP9.13□□□□□ -0.95
CLIP3-204ENST00000590559 KLK15Q9H2R5 256 aa9.13□□□□□ -0.95
CLIP3-204ENST00000590559 MBNL3Q9NUK0 354 aaKnown RBP9.13□□□□□ -0.95
CLIP3-204ENST00000590559 ZNF256Q9Y2P7 627 aaPredicted RBP9.13□□□□□ -0.95
CLIP3-204ENST00000590559 TRAV8-7A0A075B6U6 113 aa9.12□□□□□ -0.95
CLIP3-204ENST00000590559 HLA-DRB1P01911 266 aa9.12□□□□□ -0.95
CLIP3-204ENST00000590559 HBZP02008 142 aa9.12□□□□□ -0.95
CLIP3-204ENST00000590559 GTF2F2P13984 249 aa9.12□□□□□ -0.95
CLIP3-204ENST00000590559 RCC1P18754 421 aaPredicted RBP9.12□□□□□ -0.95
CLIP3-204ENST00000590559 VDAC1P21796 283 aa9.12□□□□□ -0.95
CLIP3-204ENST00000590559 DCKP27707 260 aa9.12□□□□□ -0.95
CLIP3-204ENST00000590559 ECI1P42126 302 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms