RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PSG2P11465 335 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 BSPH1Q075Z2 132 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 RAB32Q13637 225 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 KRBOX4Q5JUW0 171 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 GCSAMQ8N6F7 178 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 Q8TCH9 128 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 SCARB1Q8WTV0 552 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 LRRC46Q96FV0 321 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 SNX22Q96L94 193 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 CNTNAP3BQ96NU0 1288 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 TP53RKQ96S44 253 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 SPIN2AQ99865 258 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 SPIN2BQ9BPZ2 258 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 CNTNAP3Q9BZ76 1288 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 ESRP2Q9H6T0 727 aaKnown RBP11.91□□□□□ -0.5
LIG3-205ENST00000585941 RNF7Q9UBF6 113 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 KIF25Q9UIL4 384 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 PIEZO1Q92508 2521 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 LINC00862A6NCI5 91 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 HSD17B6O14756 317 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 PGLYRP1O75594 196 aaPredicted RBP11.91□□□□□ -0.5
LIG3-205ENST00000585941 CDS2O95674 445 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 IGHV1-46P01743 117 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 UCP1P25874 307 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 CHRNB4P30926 498 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 GABRA2P47869 451 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 AESQ08117 197 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 UNQ6494/PRO21346Q6UXR6 183 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 C5orf24Q7Z6I8 188 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 ZNF695Q8IW36 515 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 CD177Q8N6Q3 437 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 OR5D13Q8NGL4 314 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 ZCCHC14Q8WYQ9 949 aaKnown RBP11.91□□□□□ -0.5
LIG3-205ENST00000585941 COQ2Q96H96 371 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 AQP10Q96PS8 301 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 ARPC5LQ9BPX5 153 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 TOLLIPQ9H0E2 274 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 NCOR1P1Q9H4R4 102 aa11.91□□□□□ -0.5
LIG3-205ENST00000585941 H0YIZ8 118 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 MGST3O14880 152 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 ZNF737O75373 536 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 CD55P08174 381 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 C1QTNF9P0C862 333 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 EGR1P18146 543 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 TNFRSF1AP19438 455 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 F2RP25116 425 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 IL2RGP31785 369 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 CEACAM6P40199 344 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 S100A10P60903 97 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 TESK1Q15569 626 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 MSMO1Q15800 293 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 ADIPOQQ15848 244 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 TMEM268Q5VZI3 342 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 LYZL2Q7Z4W2 148 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 PRR18Q8N4B5 295 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 ZBTB34Q8NCN2 500 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 FAM222BQ8WU58 562 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 FAM216AQ8WUB2 273 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 PHYHIPLQ96FC7 376 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 WFIKKN1Q96NZ8 548 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 SHARPINQ9H0F6 387 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 COQ3Q9NZJ6 369 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 OR1A1Q9P1Q5 309 aa11.9□□□□□ -0.5
LIG3-205ENST00000585941 RBM7Q9Y580 266 aaKnown RBP11.9□□□□□ -0.5
LIG3-205ENST00000585941 KIAA2026Q5HYC2 2103 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 IGKV1D-17A0A075B6S4 117 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 TRAV39A0A0B4J263 110 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 C12orf77C9JDV5 145 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 CCL21O00585 134 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 DEDDO75618 318 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 OR4A8P0C604 315 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 IRF2P14316 349 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 GZMHP20718 246 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 MEX3BQ6ZN04 569 aaKnown RBP11.89□□□□□ -0.51
LIG3-205ENST00000585941 SLC35G3Q8N808 338 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 NINJ1Q92982 152 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 RNASE6Q93091 150 aaKnown RBP11.89□□□□□ -0.51
LIG3-205ENST00000585941 PRORYQ9H606 182 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 GCM1Q9NP62 436 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 RAB9BQ9NP90 201 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 NDRG3Q9UGV2 375 aa11.89□□□□□ -0.51
LIG3-205ENST00000585941 RPS10-NUDT3A0A1W2PQS6 291 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 RNF212BA8MTL3 300 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 ERVH48-1M5A8F1 160 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 TAAR5O14804 337 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 SPINT2O43291 252 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 FAM209AQ5JX71 171 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 NCMAPQ5T1S8 102 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 SELENOHQ8IZQ5 122 aaKnown RBP11.88□□□□□ -0.51
LIG3-205ENST00000585941 ZNF561Q8N587 486 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 BOLLQ8N9W6 283 aaKnown RBP11.88□□□□□ -0.51
LIG3-205ENST00000585941 OR1S1Q8NH92 325 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 ST8SIA2Q92186 375 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 RBPMSQ93062 196 aaKnown RBP11.88□□□□□ -0.51
LIG3-205ENST00000585941 ABHD14BQ96IU4 210 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 PLEKHA2Q9HB19 425 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 OR5AC2Q9NZP5 309 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 BSNQ9UPA5 3926 aa11.88□□□□□ -0.51
LIG3-205ENST00000585941 LRRC30A6NM36 301 aa11.87□□□□□ -0.51
LIG3-205ENST00000585941 C17orf100A8MU93 164 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms