RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 RPS2P15880 293 aaKnown RBP8.77□□□□□ -1.01
SS18-217ENST00000580958 MUC1P15941 1255 aaPredicted RBP8.77□□□□□ -1.01
SS18-217ENST00000580958 TUSC1Q2TAM9 212 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 ABCA11PQ4W5N1 156 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 PHLDA2Q53GA4 152 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 C6orf183Q5T699 404 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 DCAF12L2Q5VW00 463 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 C11orf88Q6PI97 169 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 CLEC18BQ6UXF7 455 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 ZNF788Q6ZQV5 615 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 KCTD9Q7L273 389 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 NOXA1Q86UR1 476 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 H1FOOQ8IZA3 346 aaPredicted RBP8.77□□□□□ -1.01
SS18-217ENST00000580958 SLC38A6Q8IZM9 456 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 C1orf87Q8N0U7 546 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 ZNF565Q8N9K5 539 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 ZNRF1Q8ND25 227 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 OR13A1Q8NGR1 328 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 OR10J5Q8NHC4 309 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 MRGPRDQ8TDS7 321 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 SECTM1Q8WVN6 248 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 CCL17Q92583 94 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 WDR89Q96FK6 387 aaPredicted RBP8.77□□□□□ -1.01
SS18-217ENST00000580958 CCL13Q99616 98 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 PHB2Q99623 299 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 RSRP1Q9BUV0 290 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 SLC5A7Q9GZV3 580 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 CLEC4MQ9H2X3 399 aaPredicted RBP8.77□□□□□ -1.01
SS18-217ENST00000580958 ZNF665Q9H7R5 613 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 ZFAND3Q9H8U3 227 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 TMEM106BQ9NUM4 274 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 PRR13Q9NZ81 148 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 PIPOXQ9P0Z9 390 aa8.77□□□□□ -1.01
SS18-217ENST00000580958 PPIAL4EA0A075B759 164 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 TRAV38-1A0A0B4J264 116 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 IGHV1-69-2A0A0G2JMI3 117 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 TEX13DA0A0J9YY54 714 aaPredicted RBP8.76□□□□□ -1.01
SS18-217ENST00000580958 ODAMA1E959 279 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 MEX3AA1L020 520 aaKnown RBP8.76□□□□□ -1.01
SS18-217ENST00000580958 CRYM-AS1A6NIL9 109 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 NKX6-3A6NJ46 265 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 PPIAL4DF5H284 164 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 CCSO14618 274 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 HSPA12AO43301 675 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 C1QL1O75973 258 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 DUS4LO95620 317 aaKnown RBP8.76□□□□□ -1.01
SS18-217ENST00000580958 HBZP02008 142 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 GIPP09681 153 aaPredicted RBP8.76□□□□□ -1.01
SS18-217ENST00000580958 PPIAL4FP0DN26 164 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 GZMKP49863 264 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 PPOXP50336 477 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 PIGPP57054 158 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 PAX5Q02548 391 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 ANKRD55Q3KP44 614 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 SGPP2Q8IWX5 399 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 ZNF561Q8N587 486 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 FAM216BQ8N7L0 139 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 OR5M8Q8NGP6 311 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 DNTTIP1Q9H147 329 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 NAA60Q9H7X0 242 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 CBLN4Q9NTU7 201 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 PPIAL4AQ9Y536 164 aa8.76□□□□□ -1.01
SS18-217ENST00000580958 USF3Q68DE3 2245 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 A0A0B4J2A0 478 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 A0A1W2PPR1 153 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 HSD17B6O14756 317 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 SIGLEC5O15389 551 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 OR2A4O95047 310 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 IFNA2P01563 188 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 CD8AP01732 235 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 IGFBP2P18065 325 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 DNASE1P24855 282 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 IL2RGP31785 369 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 P2RX3P56373 397 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 EDDM3BP56851 147 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 H2BFSP57053 126 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 RAP2BP61225 183 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 C4orf48Q5BLP8 95 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 LY6G6FQ5SQ64 297 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 C11orf71Q6IPW1 123 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 LPCAT3Q6P1A2 487 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 TRAT1Q6PIZ9 186 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 MEX3BQ6ZN04 569 aaKnown RBP8.75□□□□□ -1.01
SS18-217ENST00000580958 LDLRAD3Q86YD5 345 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 FGFRL1Q8N441 504 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 CCDC71LQ8N9Z2 235 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 DRAXINQ8NBI3 349 aaPredicted RBP8.75□□□□□ -1.01
SS18-217ENST00000580958 OR52L2PQ8NGH6 319 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 OR10V1Q8NGI7 309 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 OR5D13Q8NGL4 314 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 OR2T35Q8NGX2 323 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 COQ8AQ8NI60 647 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 RTN4IP1Q8WWV3 396 aaPredicted RBP8.75□□□□□ -1.01
SS18-217ENST00000580958 ARL11Q969Q4 196 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 ZNF486Q96H40 463 aaPredicted RBP8.75□□□□□ -1.01
SS18-217ENST00000580958 LURAP1Q96LR2 239 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 OR2A7Q96R45 310 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 PARP12Q9H0J9 701 aaKnown RBP8.75□□□□□ -1.01
SS18-217ENST00000580958 CCL28Q9NRJ3 127 aa8.75□□□□□ -1.01
SS18-217ENST00000580958 SLC2A9Q9NRM0 540 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms