RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 H3BUA1 57 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 HSPB6O14558 160 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 DEGS1O15121 323 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 GSTA4O15217 222 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 RBP2P50120 134 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 SF3A3Q12874 501 aaKnown RBP eCLIP11.86□□□□□ -0.51
VPS53-218ENST00000575207 Q6ZSR3 168 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 OR52M1Q8NGK5 317 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 RARRES2Q99969 163 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 OR51V1Q9H2C8 321 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 HRH4Q9H3N8 390 aa11.86□□□□□ -0.51
VPS53-218ENST00000575207 INTS9Q9NV88 658 aaKnown RBP11.86□□□□□ -0.51
VPS53-218ENST00000575207 SDCBPO00560 298 aaPredicted RBP11.85□□□□□ -0.51
VPS53-218ENST00000575207 FOLR2P14207 255 aa11.85□□□□□ -0.51
VPS53-218ENST00000575207 ATP1B3P54709 279 aa11.85□□□□□ -0.51
VPS53-218ENST00000575207 TMEM61Q8N0U2 210 aa11.85□□□□□ -0.51
VPS53-218ENST00000575207 OR2T33Q8NG76 320 aa11.85□□□□□ -0.51
VPS53-218ENST00000575207 CMC2Q9NRP2 79 aa11.85□□□□□ -0.51
VPS53-218ENST00000575207 TRAV39A0A0B4J263 110 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 MRASO14807 208 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 SLC31A2O15432 143 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 AMBPP02760 352 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 FCGR2BP31994 310 aaPredicted RBP11.84□□□□□ -0.51
VPS53-218ENST00000575207 COQ5Q5HYK3 327 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 BCL2L15Q5TBC7 163 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 ELMOD2Q8IZ81 293 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 LYPD1Q8N2G4 141 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 POC5Q8NA72 575 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 FAM162AQ96A26 154 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 CHST5Q9GZS9 411 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 MOB1AQ9H8S9 216 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 FAM118AQ9NWS6 357 aa11.84□□□□□ -0.51
VPS53-218ENST00000575207 TRAV10A0A0B4J240 114 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 C2orf70A6NJV1 201 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 ZNF254O75437 659 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 AADACP22760 399 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 RIDAP52758 137 aaKnown RBP11.83□□□□□ -0.52
VPS53-218ENST00000575207 HCCSP53701 268 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 Q3ZCU0 254 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 PAN3Q58A45 887 aaKnown RBP11.83□□□□□ -0.52
VPS53-218ENST00000575207 RSBN1Q5VWQ0 802 aaPredicted RBP11.83□□□□□ -0.52
VPS53-218ENST00000575207 RASSF6Q6ZTQ3 369 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 ZNF679Q8IYX0 411 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 FRZBQ92765 325 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 SNAPC3Q92966 411 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 GFOD1Q9NXC2 390 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 GAB2Q9UQC2 676 aa11.83□□□□□ -0.52
VPS53-218ENST00000575207 IGHV3-43A0A0B4J1X8 118 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 A0A0B4J203 849 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 IGKV1-12A0A0C4DH73 117 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 H0YJX3 145 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 FCN1O00602 326 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 LANCL1O43813 399 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 KDM4BO94953 1096 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 SERPINA3P01011 423 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 IGKV1D-12P01611 117 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 IGHV3-43DP0DP04 118 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 EDN2P20800 178 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 MTCP1P56278 107 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 PAX5Q02548 391 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 ROM1Q03395 351 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 PDZK1IP1Q13113 114 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 CDK5R1Q15078 307 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 PLGLAQ15195 96 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 SPATA12Q7Z6I5 190 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 BVESQ8NE79 360 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 FBXL15Q9H469 300 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 MAP6D1Q9H9H5 199 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 SPAG4Q9NPE6 437 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 ARMC1Q9NVT9 282 aa11.82□□□□□ -0.52
VPS53-218ENST00000575207 PRR32B1ATL7 298 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 SRSF10O75494 262 aaKnown RBP11.81□□□□□ -0.52
VPS53-218ENST00000575207 IFNA10P01566 189 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 CD74P04233 296 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 GZMHP20718 246 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 CCL1P22362 96 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 RPS16P62249 146 aaKnown RBP11.81□□□□□ -0.52
VPS53-218ENST00000575207 ZNF367Q7RTV3 350 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 TMEM179BQ7Z7N9 219 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 PLPPR1Q8TBJ4 325 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 PARP12Q9H0J9 701 aaKnown RBP11.81□□□□□ -0.52
VPS53-218ENST00000575207 IL1RAPQ9NPH3 570 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 GID8Q9NWU2 228 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 CMTM6Q9NX76 183 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 NKIRAS1Q9NYS0 192 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 OR52A1Q9UKL2 312 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 PLA2G2DQ9UNK4 145 aa11.81□□□□□ -0.52
VPS53-218ENST00000575207 LIPEQ05469 1076 aa11.8□□□□□ -0.52
VPS53-218ENST00000575207 ZNF57Q68EA5 555 aaPredicted RBP11.8□□□□□ -0.52
VPS53-218ENST00000575207 TCEANCQ8N8B7 351 aa11.8□□□□□ -0.52
VPS53-218ENST00000575207 ZNF439Q8NDP4 499 aa11.8□□□□□ -0.52
VPS53-218ENST00000575207 OR11H2Q8NH07 326 aa11.8□□□□□ -0.52
VPS53-218ENST00000575207 ARL11Q969Q4 196 aa11.8□□□□□ -0.52
VPS53-218ENST00000575207 RHOFQ9HBH0 211 aa11.8□□□□□ -0.52
VPS53-218ENST00000575207 IKZF2Q9UKS7 526 aa11.8□□□□□ -0.52
VPS53-218ENST00000575207 AP3M1Q9Y2T2 418 aa11.8□□□□□ -0.52
VPS53-218ENST00000575207 SELENOKQ9Y6D0 94 aa11.8□□□□□ -0.52
VPS53-218ENST00000575207 BBIP1A8MTZ0 92 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 C15orf65H3BRN8 121 aa11.79□□□□□ -0.52
VPS53-218ENST00000575207 BMPR1BO00238 502 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 221.9 ms