RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 ZNF488Q96MN9 340 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 RIOK2Q9BVS4 552 aaKnown RBP2.89□□□□□ -1.95
NUP88-208ENST00000574087 DSN1Q9H410 356 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 VPS29Q9UBQ0 182 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 SS18L2Q9UHA2 77 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 GNG8Q9UK08 70 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 ING4Q9UNL4 249 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 TP53TG1Q9Y2A0 90 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 NESP48681 1621 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 PSME4Q14997 1843 aa2.89□□□□□ -1.95
NUP88-208ENST00000574087 MYOM1P52179 1685 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 ADGRB3O60242 1522 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 ABCC6O95255 1503 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 LRRC7Q96NW7 1537 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 PHF3Q92576 2039 aaKnown RBP2.88□□□□□ -1.95
NUP88-208ENST00000574087 CHD1O14646 1710 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.88□□□□□ -1.95
NUP88-208ENST00000574087 A0A087WUJ7 227 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 A0A096LPI6 279 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 TGIF2-C20orf24A0A0A6YYL0 155 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 A0A0G2JN53 185 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 CLDN25C9JDP6 229 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 K7ERU9 68 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 FAAHO00519 579 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 TCF21O43680 179 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 SCO1O75880 301 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 C1orf105O95561 183 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 RLN2P04090 185 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 CSF3P09919 207 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 HIST1H1BP16401 226 aaKnown RBP2.88□□□□□ -1.95
NUP88-208ENST00000574087 TAC1P20366 129 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 KRTAP5-9P26371 169 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 HMGB2P26583 209 aaKnown RBP2.88□□□□□ -1.95
NUP88-208ENST00000574087 HTR1DP28221 377 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 IL12AP29459 219 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 GGT2P36268 569 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 OPRD1P41143 372 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 CDKN2BP42772 138 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 GLP1RP43220 463 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 VDAC2P45880 294 aaPredicted RBP2.88□□□□□ -1.95
NUP88-208ENST00000574087 AQP5P55064 265 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 TCTAP57738 103 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 TAS2R31P59538 309 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 STXBP1P61764 594 aaKnown RBP2.88□□□□□ -1.95
NUP88-208ENST00000574087 ECH1Q13011 328 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 FAM53BQ14153 422 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 ZNF235Q14590 738 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 TAF9Q16594 264 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 HIST3H3Q16695 136 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 LRRC26Q2I0M4 334 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 LRRC75BQ2VPJ9 315 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 CARD16Q5EG05 197 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 HENMT1Q5T8I9 393 aaKnown RBP2.88□□□□□ -1.95
NUP88-208ENST00000574087 CPTPQ5TA50 214 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 HIST2H3PS2Q5TEC6 136 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 ARPINQ7Z6K5 226 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 LINC01551Q86U37 167 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 DOLPP1Q86YN1 238 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 SLC35F2Q8IXU6 374 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 CMTM1Q8IZ96 169 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 ACBD7Q8N6N7 88 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 OR51G1Q8NGK1 321 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 OR10G9Q8NGN4 311 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 OR5J2Q8NH18 312 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 OR4X1Q8NH49 305 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 OR9G1Q8NH87 305 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 GPR119Q8TDV5 335 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 UBE2E3Q969T4 207 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 RCN3Q96D15 328 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 MRAP2Q96G30 205 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 SMARCD1Q96GM5 515 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 FCRL1Q96LA6 429 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 P2RX4Q99571 388 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 SIGMAR1Q99720 223 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 OSBPL11Q9BXB4 747 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 PECRQ9BY49 303 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 DCSTAMPQ9H295 470 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 MAP1LC3AQ9H492 121 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 RETNQ9HD89 108 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 MED29Q9NX70 200 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 CALML5Q9NZT1 146 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 COPZ2Q9P299 210 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 PRO0628Q9UI54 55 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 ZFP30Q9Y2G7 519 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.88□□□□□ -1.95
NUP88-208ENST00000574087 RBM7Q9Y580 266 aaKnown RBP2.88□□□□□ -1.95
NUP88-208ENST00000574087 NEO1Q92859 1461 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 NALCNQ8IZF0 1738 aa2.88□□□□□ -1.95
NUP88-208ENST00000574087 PALLDQ8WX93 1383 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 DIP2AQ14689 1571 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 NSD3Q9BZ95 1437 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 USP32Q8NFA0 1604 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 A0A087WX48 190 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 ARL5CA6NH57 179 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 FAM159BA6NKW6 160 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 BTNL10A8MVZ5 291 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 H7C417 338 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 TAAR5O14804 337 aa2.87□□□□□ -1.95
NUP88-208ENST00000574087 EDF1O60869 148 aaKnown RBP2.87□□□□□ -1.95
NUP88-208ENST00000574087 ICOSLGO75144 302 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms