RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ALKBH3Q96Q83 286 aaPredicted RBP4.97□□□□□ -1.61
VPS53-212ENST00000572259 OR2M2Q96R28 347 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 CIB1Q99828 191 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 PRSS27Q9BQR3 290 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 SLC25A33Q9BSK2 321 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 TMEM204Q9BSN7 226 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 EMC6Q9BV81 110 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 PAPOLGQ9BWT3 736 aaKnown RBP4.97□□□□□ -1.61
VPS53-212ENST00000572259 TRIM15Q9C019 465 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 LIME1Q9H400 295 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 NMNAT1Q9HAN9 279 aaPredicted RBP4.97□□□□□ -1.61
VPS53-212ENST00000572259 HRASLSQ9HDD0 168 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 MEPEQ9NQ76 525 aaPredicted RBP4.97□□□□□ -1.61
VPS53-212ENST00000572259 MED29Q9NX70 200 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 TAS2R5Q9NYW4 299 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 GLTPQ9NZD2 209 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 SEC14L4Q9UDX3 406 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 KCNIP3Q9Y2W7 256 aa4.97□□□□□ -1.61
VPS53-212ENST00000572259 CSPG4Q6UVK1 2322 aa4.96□□□□□ -1.61
VPS53-212ENST00000572259 NAV3Q8IVL0 2385 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 A0A1W2PR80 420 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 PSMB11A5LHX3 300 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 OR5B21A6NL26 309 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 hCG_2039718K7EN88 272 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 SULT1C2O00338 296 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 XKRYO14609 159 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 HSD17B6O14756 317 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 GYG2O15488 501 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 MPDU1O75352 247 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 UBL3O95164 117 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 GADD45GO95257 159 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 RAB36O95755 333 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 IFNA5P01569 189 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 FABP3P05413 133 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 CD79AP11912 226 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 HLA-DOBP13765 273 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 CBR1P16152 277 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 RAB4AP20338 218 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 FABP6P51161 128 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 UGT2B15P54855 530 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 SLC35B1P78383 322 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 VLDLRP98155 873 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 MAD2L1BPQ15013 274 aaPredicted RBP4.96□□□□□ -1.62
VPS53-212ENST00000572259 TRIM16LQ309B1 348 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 ZBED5Q49AG3 693 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 ZNF544Q6NX49 715 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 GID4Q8IVV7 300 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 Q8N402 240 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 CCDC71LQ8N9Z2 235 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 WDR31Q8NA23 367 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 LFNGQ8NES3 379 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 PFN4Q8NHR9 129 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 DTD1Q8TEA8 209 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 HPSE2Q8WWQ2 592 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 IL1F10Q8WWZ1 152 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 DHRS9Q9BPW9 319 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 COPS4Q9BT78 406 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 C1QTNF6Q9BXI9 259 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 BEX2Q9BXY8 128 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 TXNIPQ9H3M7 391 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 BEX1Q9HBH7 125 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 IL1RAPQ9NPH3 570 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 MCUBQ9NWR8 336 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 RHBDL2Q9NX52 303 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 PPP1R3CQ9UQK1 317 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 TCF19Q9Y242 345 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 SELENOKQ9Y6D0 94 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 ABCA1O95477 2261 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 TEP1Q99973 2627 aaKnown RBP4.96□□□□□ -1.62
VPS53-212ENST00000572259 CSMD2Q7Z408 3487 aa4.96□□□□□ -1.62
VPS53-212ENST00000572259 RAI1Q7Z5J4 1906 aaPredicted RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 CSMD1Q96PZ7 3565 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 HIVEP1P15822 2718 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 A0A087WUU8 490 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 A0A1W2PPI3 338 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 A0A1W2PQL4 384 aaPredicted RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 H3BMQ9 156 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 FFAR1O14842 300 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 PPP1R2P9O14990 202 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 TRMUO75648 421 aaKnown RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 NDUFB2O95178 105 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 ORM1P02763 201 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 CD14P08571 375 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 TSPAN19P0C672 248 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 CD99P14209 185 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 C4BPBP20851 252 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 LOXP28300 417 aaPredicted RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 FGF9P31371 208 aaPredicted RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 FOXG1P55316 489 aaPredicted RBP4.95□□□□□ -1.62
VPS53-212ENST00000572259 OR2B8PP59922 312 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 ERVS71-1P61550 626 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 CD47Q08722 323 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 GSG1Q2KHT4 349 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 LPCAT4Q643R3 524 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 TMEM219Q86XT9 240 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 TGIF2LYQ8IUE0 185 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 ODF3L1Q8IXM7 274 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 HS3ST5Q8IZT8 346 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 MUC15Q8N387 334 aa4.95□□□□□ -1.62
VPS53-212ENST00000572259 SLC22A24Q8N4F4 322 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms