RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 GFOD1Q9NXC2 390 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 RNF150Q9ULK6 438 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 ARL2BPQ9Y2Y0 163 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 NUBP2Q9Y5Y2 271 aa13.6□□□□□ -0.23
CLK3-227ENST00000570296 TRAV24A0A0B4J272 114 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 SDCBPO00560 298 aaPredicted RBP13.59□□□□□ -0.23
CLK3-227ENST00000570296 CSTBP04080 98 aaKnown RBP13.59□□□□□ -0.23
CLK3-227ENST00000570296 GZMHP20718 246 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 PSME3P61289 254 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 ACTBL2Q562R1 376 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 UTS2BQ765I0 119 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 SPSB1Q96BD6 273 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 MS4A10Q96PG2 267 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 NIPSNAP1Q9BPW8 284 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 ADI1Q9BV57 179 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 SPAG4Q9NPE6 437 aa13.59□□□□□ -0.23
CLK3-227ENST00000570296 CNOT2Q9NZN8 540 aaKnown RBP13.59□□□□□ -0.23
CLK3-227ENST00000570296 MAGEB3O15480 346 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 MAGEB4O15481 346 aaPredicted RBP13.58□□□□□ -0.24
CLK3-227ENST00000570296 ATF1P18846 271 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 CXCR4P61073 352 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 PPP1R8Q12972 351 aaKnown RBP13.58□□□□□ -0.24
CLK3-227ENST00000570296 GINS1Q14691 196 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 TATDN3Q17R31 274 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 NPBQ8NG41 125 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 PLPPR1Q8TBJ4 325 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 UTP4Q969X6 686 aaKnown RBP13.58□□□□□ -0.24
CLK3-227ENST00000570296 RFT1Q96AA3 541 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 NSMCE2Q96MF7 247 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 OPALINQ96PE5 141 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 CNN2Q99439 309 aaKnown RBP13.58□□□□□ -0.24
CLK3-227ENST00000570296 GGTLC1Q9BX51 225 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 MYRFQ9Y2G1 1151 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 A3GALT2U3KPV4 340 aa13.58□□□□□ -0.24
CLK3-227ENST00000570296 TRAV39A0A0B4J263 110 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 ZNF785A8K8V0 405 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 LANCL1O43813 399 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 DCTN3O75935 186 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 NDUFA3O95167 84 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 MAGEA2P43356 314 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 AKIRIN2Q53H80 203 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 TMEM217Q8N7C4 229 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 CNIH3Q8TBE1 160 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 RITA1Q96K30 269 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 DHDHQ9UQ10 334 aa13.57□□□□□ -0.24
CLK3-227ENST00000570296 C13orf42A0A1B0GVH6 325 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 CCDC182A6NF36 153 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 C15orf65H3BRN8 121 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 SLC31A2O15432 143 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 TRGV3P03979 118 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 EGR2P11161 476 aaPredicted RBP13.56□□□□□ -0.24
CLK3-227ENST00000570296 BMI1P35226 326 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 CX3CL1P78423 397 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 CCDC197Q8NCU1 140 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 OR5D18Q8NGL1 313 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 ADAT3Q96EY9 351 aaPredicted RBP13.56□□□□□ -0.24
CLK3-227ENST00000570296 NEK6Q9HC98 313 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 TP53TG1Q9Y2A0 90 aa13.56□□□□□ -0.24
CLK3-227ENST00000570296 ANKRD34BA5PLL1 514 aa13.55□□□□□ -0.24
CLK3-227ENST00000570296 MSGN1A6NI15 193 aa13.55□□□□□ -0.24
CLK3-227ENST00000570296 OR2A4O95047 310 aa13.55□□□□□ -0.24
CLK3-227ENST00000570296 RPP14O95059 124 aaKnown RBP13.55□□□□□ -0.24
CLK3-227ENST00000570296 CD300EQ496F6 205 aaPredicted RBP13.55□□□□□ -0.24
CLK3-227ENST00000570296 UNQ5815/PRO19632Q6UWF5 114 aa13.55□□□□□ -0.24
CLK3-227ENST00000570296 PPP1R27Q86WC6 154 aa13.55□□□□□ -0.24
CLK3-227ENST00000570296 ZNF439Q8NDP4 499 aa13.55□□□□□ -0.24
CLK3-227ENST00000570296 ABHD5Q8WTS1 349 aa13.55□□□□□ -0.24
CLK3-227ENST00000570296 ARL11Q969Q4 196 aa13.55□□□□□ -0.24
CLK3-227ENST00000570296 IGHV3-43A0A0B4J1X8 118 aa13.54□□□□□ -0.24
CLK3-227ENST00000570296 A0A0G2JLM5 398 aa13.54□□□□□ -0.24
CLK3-227ENST00000570296 LOC107986453A0A1B0GWG9 222 aa13.54□□□□□ -0.24
CLK3-227ENST00000570296 AIREO43918 545 aa13.54□□□□□ -0.24
CLK3-227ENST00000570296 IGHV3-43DP0DP04 118 aa13.54□□□□□ -0.24
CLK3-227ENST00000570296 DBTP11182 482 aaKnown RBP13.54□□□□□ -0.24
CLK3-227ENST00000570296 OR10G2Q8NGC3 310 aa13.54□□□□□ -0.24
CLK3-227ENST00000570296 PEMTQ9UBM1 199 aa13.54□□□□□ -0.24
CLK3-227ENST00000570296 SAMHD1Q9Y3Z3 626 aaKnown RBP13.54□□□□□ -0.24
CLK3-227ENST00000570296 DMBT1Q9UGM3 2413 aaPredicted RBP13.54□□□□□ -0.24
CLK3-227ENST00000570296 LOC102724200A0A096LPH7 203 aaPredicted RBP13.53□□□□□ -0.24
CLK3-227ENST00000570296 ZNF670-ZNF695F2Z2N8 137 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 ARPC2O15144 300 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 MT-ND2P03891 347 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 OCM2P0CE71 109 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 OCMP0CE72 109 aaPredicted RBP13.53□□□□□ -0.24
CLK3-227ENST00000570296 ZNF134P52741 427 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 TCTAP57738 103 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 CDK5Q00535 292 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 ZNF45Q02386 682 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 CT45A1Q5HYN5 189 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 SLC35F2Q8IXU6 374 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 CT45A3Q8NHU0 189 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 CMTM5Q96DZ9 223 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 FEVQ99581 238 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 REEP1Q9H902 201 aa13.53□□□□□ -0.24
CLK3-227ENST00000570296 ORC5O43913 435 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 KRT8P05787 483 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 UBCP0CG48 685 aaKnown RBP13.52□□□□□ -0.25
CLK3-227ENST00000570296 HSD17B1P14061 328 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 ALDH3A2P51648 485 aa13.52□□□□□ -0.25
CLK3-227ENST00000570296 IL13RA2Q14627 380 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms