RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SDF2Q99470 211 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 ULBP3Q9BZM4 244 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 MTCH1Q9NZJ7 389 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 FBXL7Q9UJT9 491 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 OR1Q1Q15612 314 aa9.39□□□□□ -0.91
CLK3-226ENST00000569406 FNDC4Q9H6D8 234 aaPredicted RBP9.39□□□□□ -0.91
CLK3-226ENST00000569406 ZNF443Q9Y2A4 671 aaPredicted RBP9.39□□□□□ -0.91
CLK3-226ENST00000569406 A0A1B0GTH9 108 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 DCDC2BA2VCK2 349 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 SFT2D2O95562 160 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 NUDT3O95989 172 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 PRICKLE4Q2TBC4 344 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 FAM90A2PQ658T7 463 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 COLCA1Q6ZS62 124 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 C9orf40Q8IXQ3 194 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 SLC35F2Q8IXU6 374 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 PLPP7Q8NBV4 271 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 ZNF417Q8TAU3 575 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 H7C1C5 153 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 GABRG2P18507 467 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 LCN6P62502 163 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 GABRA6Q16445 453 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.38□□□□□ -0.91
CLK3-226ENST00000569406 LRRC25Q8N386 305 aaPredicted RBP9.38□□□□□ -0.91
CLK3-226ENST00000569406 CISD2Q8N5K1 135 aaKnown RBP9.38□□□□□ -0.91
CLK3-226ENST00000569406 TMEM217Q8N7C4 229 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 C5orf30Q96GV9 206 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 OR51I2Q9H344 312 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 FAM60AQ9NP50 221 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 STARD5Q9NSY2 213 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 HEBP2Q9Y5Z4 205 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 IGHV2-26A0A0B4J1V2 119 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 FIGNL2A6NMB9 653 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 TNFRSF10CO14798 259 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 NPIPB7O75200 414 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 PNMTP11086 282 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 ZNF20P17024 532 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 SLC6A6P31641 620 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 GUCA1AP43080 201 aaPredicted RBP9.38□□□□□ -0.91
CLK3-226ENST00000569406 DECR1Q16698 335 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 BLNKQ8WV28 456 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 ST6GALNAC6Q969X2 333 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 RERGQ96A58 199 aaPredicted RBP9.38□□□□□ -0.91
CLK3-226ENST00000569406 AP1S3Q96PC3 154 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 NMNAT3Q96T66 252 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 SMIM7Q9BQ49 75 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 NRN1Q9NPD7 142 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 PRSS50Q9UI38 385 aa9.38□□□□□ -0.91
CLK3-226ENST00000569406 M0R1X1 148 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 RHBDL1O75783 438 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 HRASP01112 189 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 NGFRP08138 427 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 IGLC1P0CG04 106 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 CPMP14384 443 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 RELBQ01201 579 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 ZFP36L1Q07352 338 aaKnown RBP9.37□□□□□ -0.91
CLK3-226ENST00000569406 PMPCAQ10713 525 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 KIR2DS3Q14952 304 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 GPR157Q5UAW9 335 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 CSNK1A1LQ8N752 337 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 CLDND2Q8NHS1 167 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 PTX4Q96A99 478 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 TSSK2Q96PF2 358 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 PYGO2Q9BRQ0 406 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 LMF2Q9BU23 707 aaKnown RBP9.37□□□□□ -0.91
CLK3-226ENST00000569406 RNF114Q9Y508 228 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 MUC21A0A0G2JKD1 596 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 MUC21A0A140T8X8 626 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 H0YGG7 62 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 B3GALT2O43825 422 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 IL12BP29460 328 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 FBXW4P57775 412 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 MUC21Q5SSG8 566 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 OR13H1Q8NG92 308 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 OR10AC1Q8NH08 325 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 BAHD1Q8TBE0 780 aaPredicted RBP9.37□□□□□ -0.91
CLK3-226ENST00000569406 FNDC9Q8TBE3 224 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 SPXQ9BT56 116 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 RXFP3Q9NSD7 469 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 TP73-AS1Q9UF72 201 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 C11orf98E9PRG8 122 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 MSTNO14793 375 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 DEDDO75618 318 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 IGKV1D-16P01601 117 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 CLDN15P56746 228 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 SCAND1P57086 179 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 SYS1Q8N2H4 156 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 RNF128Q8TEB7 428 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 MRAP2Q96G30 205 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 CHRNA10Q9GZZ6 450 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 YAE1D1Q9NRH1 226 aa9.37□□□□□ -0.91
CLK3-226ENST00000569406 TSSC4Q9Y5U2 329 aaPredicted RBP9.37□□□□□ -0.91
CLK3-226ENST00000569406 HRKO00198 91 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 ZNF207O43670 478 aaKnown RBP9.36□□□□□ -0.91
CLK3-226ENST00000569406 CLDN1O95832 211 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 PMCHP20382 165 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 HNRNPA2B1P22626 353 aaKnown RBP9.36□□□□□ -0.91
CLK3-226ENST00000569406 TIMP3P35625 211 aa9.36□□□□□ -0.91
CLK3-226ENST00000569406 NKX2-1P43699 371 aaPredicted RBP9.36□□□□□ -0.91
CLK3-226ENST00000569406 HSD52Q0P140 79 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms