RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 ZMAT5Q9UDW3 170 aaKnown RBP11.73□□□□□ -0.53
CLN3-236ENST00000568558 PSORS1C1Q9UIG5 152 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 ING4Q9UNL4 249 aa11.73□□□□□ -0.53
CLN3-236ENST00000568558 IRGMA1A4Y4 181 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 CCL24O00175 119 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 SDCBPO00560 298 aaPredicted RBP11.72□□□□□ -0.53
CLN3-236ENST00000568558 CSTBP04080 98 aaKnown RBP11.72□□□□□ -0.53
CLN3-236ENST00000568558 RPLP1P05386 114 aaKnown RBP11.72□□□□□ -0.53
CLN3-236ENST00000568558 SERPINA2P20848 420 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 ZNF93P35789 620 aaPredicted RBP11.72□□□□□ -0.53
CLN3-236ENST00000568558 GP2P55259 537 aaKnown RBP11.72□□□□□ -0.53
CLN3-236ENST00000568558 MPV17LQ2QL34 196 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 DDI2Q5TDH0 399 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 FAM53AQ6NSI3 398 aaPredicted RBP11.72□□□□□ -0.53
CLN3-236ENST00000568558 RPL22L1Q6P5R6 122 aaKnown RBP11.72□□□□□ -0.53
CLN3-236ENST00000568558 AHSA2Q719I0 299 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 ZNF485Q8NCK3 441 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 RTN4IP1Q8WWV3 396 aaPredicted RBP11.72□□□□□ -0.53
CLN3-236ENST00000568558 ST6GALNAC6Q969X2 333 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 GON7Q9BXV9 100 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 TMEM138Q9NPI0 162 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 FKBP14Q9NWM8 211 aa11.72□□□□□ -0.53
CLN3-236ENST00000568558 EXOSC1Q9Y3B2 195 aaKnown RBP11.72□□□□□ -0.53
CLN3-236ENST00000568558 IGHV3-43A0A0B4J1X8 118 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 A0A1W2PP11 408 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 EFCAB10A6NFE3 127 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 ORC5O43913 435 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 RAMP3O60896 148 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 ATP6V1G2O95670 118 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 IGHV3-43DP0DP04 118 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 MYL12AP19105 171 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 CD1BP29016 333 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 BDKRB2P30411 391 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 RAB25P57735 213 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 PPP3R1P63098 170 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 GPR50Q13585 617 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 DEFB136Q30KP8 78 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 CCDC58Q4VC31 144 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 CXorf66Q5JRM2 361 aaPredicted RBP11.71□□□□□ -0.53
CLN3-236ENST00000568558 ATAD3CQ5T2N8 411 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 TMPRSS11AQ6ZMR5 421 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 ZNF497Q6ZNH5 498 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 LCNL1Q6ZST4 164 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 RNF152Q8N8N0 203 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 ZFP41Q8N8Y5 198 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 OR8U1Q8NH10 309 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 CCDC107Q8WV48 283 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 S100A13Q99584 98 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 PLSCR3Q9NRY6 295 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 PLCXD1Q9NUJ7 323 aa11.71□□□□□ -0.53
CLN3-236ENST00000568558 PAK1IP1Q9NWT1 392 aaPredicted RBP11.71□□□□□ -0.53
CLN3-236ENST00000568558 CNOT2Q9NZN8 540 aaKnown RBP11.71□□□□□ -0.53
CLN3-236ENST00000568558 ZNF736B4DX44 427 aaPredicted RBP11.7□□□□□ -0.54
CLN3-236ENST00000568558 SLC31A2O15432 143 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 ZNF780AO75290 641 aaPredicted RBP11.7□□□□□ -0.54
CLN3-236ENST00000568558 MOSP00540 346 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 MT-ND4P03905 459 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 ELANEP08246 267 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 IL3RAP26951 378 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 CDX1P47902 265 aaPredicted RBP11.7□□□□□ -0.54
CLN3-236ENST00000568558 LUMP51884 338 aaPredicted RBP11.7□□□□□ -0.54
CLN3-236ENST00000568558 CFHR3Q02985 330 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 FOXE3Q13461 319 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 KIR2DS1Q14954 304 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 Q3ZCU0 254 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 C6orf141Q5SZD1 244 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 IZUMO2Q6UXV1 221 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 ZNF439Q8NDP4 499 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 OR5M8Q8NGP6 311 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 OR13C5Q8NGS8 318 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 NEK7Q8TDX7 302 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 ORAI1Q96D31 301 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 S1PR3Q99500 378 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 BABAM2Q9NXR7 383 aa11.7□□□□□ -0.54
CLN3-236ENST00000568558 AIPO00170 330 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 OGG1O15527 345 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 TXNL1O43396 289 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 RRP9O43818 475 aaKnown RBP11.69□□□□□ -0.54
CLN3-236ENST00000568558 IGFBP3P17936 291 aaPredicted RBP11.69□□□□□ -0.54
CLN3-236ENST00000568558 ZNF137PP52743 207 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 C9orf66Q5T8R8 295 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 SLC25A48Q6ZT89 311 aaKnown RBP11.69□□□□□ -0.54
CLN3-236ENST00000568558 FAM71E2Q8N5Q1 922 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 OR8H1Q8NGG4 311 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 SMIM19Q96E16 107 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 ZNF184Q99676 751 aaPredicted RBP11.69□□□□□ -0.54
CLN3-236ENST00000568558 RASL11BQ9BPW5 248 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 HSPB9Q9BQS6 159 aa11.69□□□□□ -0.54
CLN3-236ENST00000568558 RCC2Q9P258 522 aaKnown RBP11.69□□□□□ -0.54
CLN3-236ENST00000568558 LSM4Q9Y4Z0 139 aaKnown RBP11.69□□□□□ -0.54
CLN3-236ENST00000568558 C12orf77C9JDV5 145 aa11.68□□□□□ -0.54
CLN3-236ENST00000568558 IGHG4P01861 327 aa11.68□□□□□ -0.54
CLN3-236ENST00000568558 NHLRC4P0CG21 123 aaPredicted RBP11.68□□□□□ -0.54
CLN3-236ENST00000568558 GTF2F2P13984 249 aa11.68□□□□□ -0.54
CLN3-236ENST00000568558 MYF6P23409 242 aa11.68□□□□□ -0.54
CLN3-236ENST00000568558 VHLP40337 213 aa11.68□□□□□ -0.54
CLN3-236ENST00000568558 RIPK1Q13546 671 aa11.68□□□□□ -0.54
CLN3-236ENST00000568558 SLC22A6Q4U2R8 563 aa11.68□□□□□ -0.54
CLN3-236ENST00000568558 DMKNQ6E0U4 476 aaPredicted RBP11.68□□□□□ -0.54
CLN3-236ENST00000568558 STX19Q8N4C7 294 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms