RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 OCSTAMPQ9BR26 566 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 SLC25A33Q9BSK2 321 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 ACOT13Q9NPJ3 140 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 GFOD1Q9NXC2 390 aa14.98□□□□□ -0.01
CLN3-227ENST00000567495 FAM90A9PA6NNJ1 464 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 SLC22A1O15245 554 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 ATP6V1G2O95670 118 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 BPNT1O95861 308 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 MPIG6BO95866 241 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 IGHV3-7P01780 117 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 CD24P25063 80 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 IL3RAP26951 378 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 VHLP40337 213 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 VDAC2P45880 294 aaPredicted RBP14.97□□□□□ -0.01
CLN3-227ENST00000567495 GNG10P50151 68 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 LOXL3P58215 753 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 STEAP3Q658P3 488 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 SIGIRRQ6IA17 410 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 TMEM59Q9BXS4 323 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 WNT10AQ9GZT5 417 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 Q9H521 79 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 KCNIP1Q9NZI2 227 aa14.97□□□□□ -0.01
CLN3-227ENST00000567495 C12orf77C9JDV5 145 aa14.96□□□□□ -0.01
CLN3-227ENST00000567495 MRPS14O60783 128 aaKnown RBP14.96□□□□□ -0.01
CLN3-227ENST00000567495 FBXO24O75426 580 aa14.96□□□□□ -0.01
CLN3-227ENST00000567495 VSIG8P0DPA2 414 aa14.96□□□□□ -0.01
CLN3-227ENST00000567495 PSMD7P51665 324 aa14.96□□□□□ -0.01
CLN3-227ENST00000567495 RPS27AP62979 156 aaKnown RBP14.96□□□□□ -0.01
CLN3-227ENST00000567495 HABP2Q14520 560 aaPredicted RBP14.96□□□□□ -0.01
CLN3-227ENST00000567495 TMEM91Q6ZNR0 172 aa14.96□□□□□ -0.01
CLN3-227ENST00000567495 ZNF367Q7RTV3 350 aa14.96□□□□□ -0.01
CLN3-227ENST00000567495 LRRC42Q9Y546 428 aa14.96□□□□□ -0.01
CLN3-227ENST00000567495 A0A1W2PPI3 338 aa14.95□□□□□ -0.02
CLN3-227ENST00000567495 GAPDHP04406 335 aaKnown RBP14.95□□□□□ -0.02
CLN3-227ENST00000567495 MAP2K4P45985 399 aa14.95□□□□□ -0.02
CLN3-227ENST00000567495 RPS25P62851 125 aaKnown RBP14.95□□□□□ -0.02
CLN3-227ENST00000567495 EMX1Q04741 257 aaPredicted RBP14.95□□□□□ -0.02
CLN3-227ENST00000567495 ZNF816Q0VGE8 651 aaPredicted RBP14.95□□□□□ -0.02
CLN3-227ENST00000567495 DRAM1Q8N682 238 aa14.95□□□□□ -0.02
CLN3-227ENST00000567495 OR4K15Q8NH41 348 aa14.95□□□□□ -0.02
CLN3-227ENST00000567495 OR56B4Q8NH76 319 aa14.95□□□□□ -0.02
CLN3-227ENST00000567495 TM2D1Q9BX74 207 aa14.95□□□□□ -0.02
CLN3-227ENST00000567495 PLGRKTQ9HBL7 147 aa14.95□□□□□ -0.02
CLN3-227ENST00000567495 MBNL3Q9NUK0 354 aaKnown RBP14.95□□□□□ -0.02
CLN3-227ENST00000567495 GNG12Q9UBI6 72 aa14.95□□□□□ -0.02
CLN3-227ENST00000567495 UBE2QL1A1L167 161 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 CCRL2O00421 344 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 SLC17A2O00624 439 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 HSD17B6O14756 317 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 HBZP02008 142 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 LPLP06858 475 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 CHATP28329 748 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 GABARAPL2P60520 117 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 Q6ZS46 218 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 OR2W3Q7Z3T1 314 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 WIPF2Q8TF74 440 aaPredicted RBP14.94□□□□□ -0.02
CLN3-227ENST00000567495 URM1Q9BTM9 101 aaKnown RBP14.94□□□□□ -0.02
CLN3-227ENST00000567495 TAF9BQ9HBM6 251 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 MOB4Q9Y3A3 225 aa14.94□□□□□ -0.02
CLN3-227ENST00000567495 TMEM14DPA8MWL7 114 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 TXNL1O43396 289 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 TSPAN15O95858 294 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 SNRNP70P08621 437 aaKnown RBP14.93□□□□□ -0.02
CLN3-227ENST00000567495 ARSBP15848 533 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 RCC1P18754 421 aaPredicted RBP14.93□□□□□ -0.02
CLN3-227ENST00000567495 QRFPP83859 136 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 ABCA11PQ4W5N1 156 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 NKAPLQ5M9Q1 402 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 OR10K2Q6IF99 312 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 NDUFA11Q86Y39 141 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 C11orf44Q8N8P7 122 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 VWFP04275 2813 aa14.93□□□□□ -0.02
CLN3-227ENST00000567495 A0A1W2PPE3 182 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 TMEM11P17152 192 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 CALRP27797 417 aaKnown RBP14.92□□□□□ -0.02
CLN3-227ENST00000567495 ZNF137PP52743 207 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 HTD2P86397 168 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 FABP5Q01469 135 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 UNC119Q13432 240 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 HES1Q14469 280 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 RAB11BQ15907 218 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 SLC25A48Q6ZT89 311 aaKnown RBP14.92□□□□□ -0.02
CLN3-227ENST00000567495 SVOPQ8N4V2 548 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 FAM110DQ8TAY7 271 aaPredicted RBP14.92□□□□□ -0.02
CLN3-227ENST00000567495 UBALD1Q8TB05 177 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 MRPL30Q8TCC3 161 aaKnown RBP14.92□□□□□ -0.02
CLN3-227ENST00000567495 ST6GALNAC6Q969X2 333 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 YTHDF1Q9BYJ9 559 aaKnown RBP14.92□□□□□ -0.02
CLN3-227ENST00000567495 RIMS4Q9H426 269 aaPredicted RBP14.92□□□□□ -0.02
CLN3-227ENST00000567495 OR2S2Q9NQN1 319 aa14.92□□□□□ -0.02
CLN3-227ENST00000567495 IGHV3-43A0A0B4J1X8 118 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 IGHV1-3A0A0C4DH29 117 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 FGF16O43320 207 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 DENRO43583 198 aaKnown RBP14.91□□□□□ -0.02
CLN3-227ENST00000567495 RGS11O94810 467 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 AMY1AP04745 511 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 AMY2AP04746 511 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 IGHV3-43DP0DP04 118 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 GALP22466 123 aa14.91□□□□□ -0.02
CLN3-227ENST00000567495 BLVRBP30043 206 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms