RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 A0A087X0M5 115 aa15.84■□□□□ 0.13
CLN3-225ENST00000566824 A0A1B0GX30 115 aa15.84■□□□□ 0.13
CLN3-225ENST00000566824 A0A1W2PPE3 182 aa15.84■□□□□ 0.13
CLN3-225ENST00000566824 IGLV1-47P01700 117 aa15.84■□□□□ 0.13
CLN3-225ENST00000566824 RANBP1P43487 201 aa15.84■□□□□ 0.13
CLN3-225ENST00000566824 LOXL3P58215 753 aa15.84■□□□□ 0.13
CLN3-225ENST00000566824 UBA52P62987 128 aaKnown RBP15.84■□□□□ 0.13
CLN3-225ENST00000566824 TAF15Q92804 592 aaKnown RBP eCLIP15.84■□□□□ 0.13
CLN3-225ENST00000566824 MDFIQ99750 246 aa15.84■□□□□ 0.13
CLN3-225ENST00000566824 CHMP1AQ9HD42 196 aaPredicted RBP15.84■□□□□ 0.13
CLN3-225ENST00000566824 A0A0A6YYJ9 748 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 METTL21EPA6NDL7 271 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 F2RL2O00254 374 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 HIST1H1DP16402 221 aaKnown RBP15.83■□□□□ 0.12
CLN3-225ENST00000566824 GNMTQ14749 295 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 C6orf183Q5T699 404 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 OR52W1Q6IF63 320 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 RBMS3Q6XE24 437 aaKnown RBP15.83■□□□□ 0.12
CLN3-225ENST00000566824 LDLRAD3Q86YD5 345 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 DTX3Q8N9I9 347 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 SETD6Q8TBK2 473 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 DCSTAMPQ9H295 470 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 SCOCQ9UIL1 159 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 SPATA2Q9UM82 520 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 PSG11Q9UQ72 335 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 ETV7Q9Y603 341 aa15.83■□□□□ 0.12
CLN3-225ENST00000566824 SDCBPO00560 298 aaPredicted RBP15.82■□□□□ 0.12
CLN3-225ENST00000566824 FBP1P09467 338 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 IER3P46695 156 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 GNG10P50151 68 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 LGALS4P56470 323 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 HMGN3Q15651 99 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 CDNFQ49AH0 187 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 PLA1AQ53H76 456 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 IZUMO1Q8IYV9 350 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 OR10A7Q8NGE5 316 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 OR52L2PQ8NGH6 319 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 OR10V1Q8NGI7 309 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 CMSS1Q9BQ75 279 aaKnown RBP15.82■□□□□ 0.12
CLN3-225ENST00000566824 GFOD1Q9NXC2 390 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 ABRACLQ9P1F3 81 aa15.82■□□□□ 0.12
CLN3-225ENST00000566824 TRBV6-6A0A0A6YYG2 114 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 SLC31A2O15432 143 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 SSX2Q16385 188 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 CROCCP3Q8IVE0 287 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.81■□□□□ 0.12
CLN3-225ENST00000566824 BEND2Q8NDZ0 799 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 MAFIPQ8WZ33 124 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 MEGF9Q9H1U4 602 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 Q9N2K0 584 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 C12orf4Q9NQ89 552 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 TBL2Q9Y4P3 447 aaKnown RBP15.81■□□□□ 0.12
CLN3-225ENST00000566824 HILPDAQ9Y5L2 63 aa15.81■□□□□ 0.12
CLN3-225ENST00000566824 LY6LH3BQJ8 138 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 J3QR06 171 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 SPINT2O43291 252 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 RAB13P51153 203 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 SCAND1P57086 179 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 HLA-DRB5Q30154 266 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 ZNF260Q3ZCT1 412 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 OR9G1Q8NH87 305 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 PIFOQ8TCI5 191 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 CHIAQ9BZP6 476 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 KCNIP1Q9NZI2 227 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 ZNF230Q9UIE0 474 aaPredicted RBP15.8■□□□□ 0.12
CLN3-225ENST00000566824 CEPT1Q9Y6K0 416 aa15.8■□□□□ 0.12
CLN3-225ENST00000566824 TMEM235A6NFC5 223 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 BUB1B-PAK6H3BSN5 160 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 TOR1AO14656 332 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 SCTP09683 121 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 CD3GP09693 182 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 PTHLHP12272 177 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 ZNF134P52741 427 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 TMBIM6P55061 237 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 DIAPH2-AS1Q14236 149 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 KRTAP21-3Q3LHN1 58 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 TRAT1Q6PIZ9 186 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 SAMD12Q8N8I0 201 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 ZNF439Q8NDP4 499 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 OR52M1Q8NGK5 317 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 JMJD8Q96S16 334 aa15.79■□□□□ 0.12
CLN3-225ENST00000566824 RIMS4Q9H426 269 aaPredicted RBP15.79■□□□□ 0.12
CLN3-225ENST00000566824 TRAV18A0A075B6X5 111 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 IGKV1D-8A0A087WSZ0 117 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 IGKV1-6A0A0C4DH72 117 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 SSX5O60225 188 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 EIF4EP06730 217 aaKnown RBP15.78■□□□□ 0.12
CLN3-225ENST00000566824 FCGR3AP08637 254 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 HTR1DP28221 377 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 PPP1CCP36873 323 aaKnown RBP15.78■□□□□ 0.12
CLN3-225ENST00000566824 FAM189A2Q15884 450 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 FBLN7Q53RD9 439 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 MINOS1Q5TGZ0 78 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 RAB2BQ8WUD1 216 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 NUDCD2Q8WVJ2 157 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 SSMEM1Q8WWF3 244 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 ISOC1Q96CN7 298 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 MALSU1Q96EH3 234 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 SSX3Q99909 188 aa15.78■□□□□ 0.12
CLN3-225ENST00000566824 PARP12Q9H0J9 701 aaKnown RBP15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms