RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 GFOD1Q9NXC2 390 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 ETAA1Q9NY74 926 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 AK3Q9UIJ7 227 aa7.92□□□□□ -1.14
CLN3-220ENST00000566040 TRBV6-6A0A0A6YYG2 114 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 FUOMA2VDF0 154 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 A6NDX4 124 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 NOTOA8MTQ0 251 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 MCRIP1C9JLW8 97 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 BUB1B-PAK6H3BSN5 160 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 HBZP02008 142 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 SNRPBP14678 240 aaKnown RBP7.91□□□□□ -1.14
CLN3-220ENST00000566040 MDKP21741 143 aaPredicted RBP7.91□□□□□ -1.14
CLN3-220ENST00000566040 BLVRBP30043 206 aaPredicted RBP7.91□□□□□ -1.14
CLN3-220ENST00000566040 VEGFCP49767 419 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 DYNLT3P51808 116 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 NCS1P62166 190 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 HERPUD1Q15011 391 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 AANATQ16613 207 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 LRRC75BQ2VPJ9 315 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 NKAPLQ5M9Q1 402 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 MINOS1Q5TGZ0 78 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 SFXN4Q6P4A7 337 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 Q6ZS46 218 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 Q6ZSV7 163 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 ODF3L1Q8IXM7 274 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 LGALS14Q8TCE9 139 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 SSX3Q99909 188 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 FUNDC2Q9BWH2 189 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 HSF4Q9ULV5 492 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 MINOS1-NBL1R4GNA1 71 aa7.91□□□□□ -1.14
CLN3-220ENST00000566040 IGKV1D-8A0A087WSZ0 117 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 LOC100506127A0A0U1RQW1 187 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 J3QR06 171 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 CA11O75493 328 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 NDUFA7O95182 113 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 AMY1AP04745 511 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 AMY2AP04746 511 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 RAB6AP20340 208 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 MYL9P24844 172 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 MXD1Q05195 221 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 HABP2Q14520 560 aaPredicted RBP7.9□□□□□ -1.14
CLN3-220ENST00000566040 SSX2Q16385 188 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 LY6EQ16553 131 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 CTF1Q16619 201 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 LTC4SQ16873 150 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 TPTE2P1Q5T6R2 138 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 TPRA1Q86W33 373 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 LINC00311Q8N616 119 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 C8orf31Q8N9H6 132 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 OR10A7Q8NGE5 316 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 OR52M1Q8NGK5 317 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 OR9G1Q8NH87 305 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 ARL11Q969Q4 196 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 ZDHHC16Q969W1 377 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 MALSU1Q96EH3 234 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 KCTD7Q96MP8 289 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 MMP28Q9H239 520 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 TAF9BQ9HBM6 251 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 PCDHB16Q9NRJ7 776 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 SSR3Q9UNL2 185 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 TCF19Q9Y242 345 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 HILPDAQ9Y5L2 63 aa7.9□□□□□ -1.14
CLN3-220ENST00000566040 MEGF8Q7Z7M0 2845 aa7.9□□□□□ -1.15
CLN3-220ENST00000566040 hCG_1809904A0A1W2PP81 198 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 A0A1W2PPE2 198 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 A0A1W2PR64 198 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 A0A1W2PRV1 198 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 FAM90A9PA6NNJ1 464 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 PDCD5O14737 125 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 PLXNB1O43157 2135 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 SSX5O60225 188 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 CD24P25063 80 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 NFYBP25208 207 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 HTR1DP28221 377 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 RPS19P39019 145 aaKnown RBP7.89□□□□□ -1.15
CLN3-220ENST00000566040 GNG10P50151 68 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 ZNF137PP52743 207 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 LSM3P62310 102 aaKnown RBP7.89□□□□□ -1.15
CLN3-220ENST00000566040 SRSF4Q08170 494 aaKnown RBP7.89□□□□□ -1.15
CLN3-220ENST00000566040 DYNC1I2Q13409 638 aaKnown RBP7.89□□□□□ -1.15
CLN3-220ENST00000566040 RBM39Q14498 530 aaKnown RBP7.89□□□□□ -1.15
CLN3-220ENST00000566040 CT45A1Q5HYN5 189 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 OR52W1Q6IF63 320 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 RBMS3Q6XE24 437 aaKnown RBP7.89□□□□□ -1.15
CLN3-220ENST00000566040 SLC25A48Q6ZT89 311 aaKnown RBP7.89□□□□□ -1.15
CLN3-220ENST00000566040 TMEM219Q86XT9 240 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 ZNF565Q8N9K5 539 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 OR52L2PQ8NGH6 319 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 OR10R2Q8NGX6 335 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 CT45A3Q8NHU0 189 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 LINC01006Q8NI28 216 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 NEK7Q8TDX7 302 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 WIPF2Q8TF74 440 aaPredicted RBP7.89□□□□□ -1.15
CLN3-220ENST00000566040 PTX4Q96A99 478 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 ZNF702PQ9H963 129 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.89□□□□□ -1.15
CLN3-220ENST00000566040 DPM3Q9P2X0 92 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 DAPK2Q9UIK4 370 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 RAB22AQ9UL26 194 aa7.89□□□□□ -1.15
CLN3-220ENST00000566040 FAM96BQ9Y3D0 163 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms