RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 FAM90A23PA8MXZ1 464 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 SPINT2O43291 252 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 REG1BP48304 166 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 AQP4P55087 323 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 GPR50Q13585 617 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 FAM53AQ6NSI3 398 aaPredicted RBP16.5■□□□□ 0.23
CLN3-219ENST00000565778 PRR18Q8N4B5 295 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 NRG4Q8WWG1 115 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 FAM46BQ96A09 425 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 RAB9BQ9NP90 201 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 GHRLQ9UBU3 117 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 TPRKBQ9Y3C4 175 aa16.5■□□□□ 0.23
CLN3-219ENST00000565778 HSD17B6O14756 317 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 IGKV1D-33P01593 117 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 IGKV1-33P01594 117 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 GLAP06280 429 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 LOXL3P58215 753 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 C6orf183Q5T699 404 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 FAM27D1Q5T7N8 215 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 GLT8D1Q68CQ7 371 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 CEACAM19Q7Z692 300 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 LINC00311Q8N616 119 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 SGCDQ92629 289 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 Q96M66 194 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 CST11Q9H112 138 aa16.49■□□□□ 0.23
CLN3-219ENST00000565778 IGHV1-3A0A0C4DH29 117 aa16.48■□□□□ 0.23
CLN3-219ENST00000565778 C12orf77C9JDV5 145 aa16.48■□□□□ 0.23
CLN3-219ENST00000565778 CA11O75493 328 aa16.48■□□□□ 0.23
CLN3-219ENST00000565778 RCC1P18754 421 aaPredicted RBP16.48■□□□□ 0.23
CLN3-219ENST00000565778 IL3RAP26951 378 aa16.48■□□□□ 0.23
CLN3-219ENST00000565778 GP2P55259 537 aaKnown RBP16.48■□□□□ 0.23
CLN3-219ENST00000565778 ZNF816Q0VGE8 651 aaPredicted RBP16.48■□□□□ 0.23
CLN3-219ENST00000565778 RBM48Q5RL73 367 aaKnown RBP16.48■□□□□ 0.23
CLN3-219ENST00000565778 C8orf31Q8N9H6 132 aa16.48■□□□□ 0.23
CLN3-219ENST00000565778 OR4X2Q8NGF9 303 aa16.48■□□□□ 0.23
CLN3-219ENST00000565778 GNG12Q9UBI6 72 aa16.48■□□□□ 0.23
CLN3-219ENST00000565778 LSM2Q9Y333 95 aaKnown RBP16.48■□□□□ 0.23
CLN3-219ENST00000565778 NOTCH1P46531 2555 aa16.48■□□□□ 0.23
CLN3-219ENST00000565778 IGHV3-72A0A0B4J1Y9 119 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 MPIG6BO95866 241 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 HBZP02008 142 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 UBBP0CG47 229 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 SRMP19623 302 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 TCTEX1D4Q5JR98 221 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 SIGIRRQ6IA17 410 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 TRAT1Q6PIZ9 186 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 LRRTM1Q86UE6 522 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 OR10V1Q8NGI7 309 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 KCNIP1Q9NZI2 227 aa16.47■□□□□ 0.23
CLN3-219ENST00000565778 TSSC4Q9Y5U2 329 aaPredicted RBP16.47■□□□□ 0.23
CLN3-219ENST00000565778 PDCD6O75340 191 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 HSMCR30P0CW71 290 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 SLC35A2P78381 396 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 BEAN1Q3B7T3 259 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 Q3ZCU0 254 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 HSD17B12Q53GQ0 312 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 OXLD1Q5BKU9 147 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 SAMD5Q5TGI4 173 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 LIPKQ5VXJ0 399 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 C10orf99Q6UWK7 81 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 GAPTQ8N292 157 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 C5orf56Q8N8D9 126 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 OR1L1Q8NH94 360 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 PHYHIPQ92561 330 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 UFD1Q92890 307 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 TMEM203Q969S6 136 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 NEDD4LQ96PU5 975 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 CCDC90BQ9GZT6 254 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 TAF9BQ9HBM6 251 aa16.46■□□□□ 0.23
CLN3-219ENST00000565778 NCBP2LA6PVI3 153 aaKnown RBP16.45■□□□□ 0.22
CLN3-219ENST00000565778 SLC31A2O15432 143 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 FGF16O43320 207 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 SC5DO75845 299 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 PF4V1P10720 104 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 MYF6P23409 242 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 IRF3Q14653 427 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 TMEM30BQ3MIR4 351 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 KHDC1LQ5JSQ8 128 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 NKAPLQ5M9Q1 402 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 C1orf100Q5SVJ3 147 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 OR10K2Q6IF99 312 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 OR2T10Q8NGZ9 312 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 RTN4IP1Q8WWV3 396 aaPredicted RBP16.45■□□□□ 0.22
CLN3-219ENST00000565778 EAF1Q96JC9 268 aaPredicted RBP16.45■□□□□ 0.22
CLN3-219ENST00000565778 OR2S2Q9NQN1 319 aa16.45■□□□□ 0.22
CLN3-219ENST00000565778 PSMB11A5LHX3 300 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 RGS10O43665 173 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 VSIG8P0DPA2 414 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 ZNF134P52741 427 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 EBI3Q14213 229 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 CT45A1Q5HYN5 189 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 SLC25A48Q6ZT89 311 aaKnown RBP16.44■□□□□ 0.22
CLN3-219ENST00000565778 CT45A3Q8NHU0 189 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 ST6GALNAC6Q969X2 333 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 CYYR1Q96J86 154 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 VCX3BQ9H321 246 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 DUSP21Q9H596 190 aa16.44■□□□□ 0.22
CLN3-219ENST00000565778 SERPINE3A8MV23 424 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 UCHL1P09936 223 aa16.43■□□□□ 0.22
CLN3-219ENST00000565778 CD33P20138 364 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms