RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZNF184Q99676 751 aaPredicted RBP13.45□□□□□ -0.26
CLN3-216ENST00000565316 SPACA1Q9HBV2 294 aa13.45□□□□□ -0.26
CLN3-216ENST00000565316 ZMAT5Q9UDW3 170 aaKnown RBP13.45□□□□□ -0.26
CLN3-216ENST00000565316 DIMT1Q9UNQ2 313 aaKnown RBP13.45□□□□□ -0.26
CLN3-216ENST00000565316 IRGMA1A4Y4 181 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 MOSP00540 346 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 GP2P55259 537 aaKnown RBP13.44□□□□□ -0.26
CLN3-216ENST00000565316 FOXE3Q13461 319 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 GPR176Q14439 515 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 TMEM30BQ3MIR4 351 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 SLC25A48Q6ZT89 311 aaKnown RBP13.44□□□□□ -0.26
CLN3-216ENST00000565316 ZNF485Q8NCK3 441 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 ZNF555Q8NEP9 628 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 OR8H1Q8NGG4 311 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 OR13C5Q8NGS8 318 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 MRPS24Q96EL2 167 aaKnown RBP13.44□□□□□ -0.26
CLN3-216ENST00000565316 S1PR3Q99500 378 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 GON7Q9BXV9 100 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 DCLRE1BQ9H816 532 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 SMPD3Q9NY59 655 aaPredicted RBP13.44□□□□□ -0.26
CLN3-216ENST00000565316 CLEC2DQ9UHP7 191 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 EXOSC1Q9Y3B2 195 aaKnown RBP13.44□□□□□ -0.26
CLN3-216ENST00000565316 RYR3Q15413 4870 aa13.44□□□□□ -0.26
CLN3-216ENST00000565316 TRAV8-7A0A075B6U6 113 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 TRBV5-7A0A0A0MS05 114 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 IGHV3-43A0A0B4J1X8 118 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 MAGEA13PA6NCF6 341 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 C12orf77C9JDV5 145 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 AIPO00170 330 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 CCL24O00175 119 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 TXNL1O43396 289 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 RPLP1P05386 114 aaKnown RBP13.43□□□□□ -0.26
CLN3-216ENST00000565316 IGHV3-43DP0DP04 118 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 FSTP19883 344 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 VHLP40337 213 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 ZNF134P52741 427 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 CFHR3Q02985 330 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 CD69Q07108 199 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 DCTN2Q13561 401 aaKnown RBP13.43□□□□□ -0.26
CLN3-216ENST00000565316 KIR2DS1Q14954 304 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 Q499Y3 187 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 YIF1BQ5BJH7 314 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 UNQ9370/PRO34162Q6UXP9 181 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 STX19Q8N4C7 294 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 FAM71E2Q8N5Q1 922 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 NEK7Q8TDX7 302 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 CKLFQ9UBR5 152 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 ZNF580Q9UK33 172 aa13.43□□□□□ -0.26
CLN3-216ENST00000565316 ZNF736B4DX44 427 aaPredicted RBP13.42□□□□□ -0.26
CLN3-216ENST00000565316 MCRIP1C9JLW8 97 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 SLC31A2O15432 143 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 ELANEP08246 267 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 MYL12AP19105 171 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 CDX1P47902 265 aaPredicted RBP13.42□□□□□ -0.26
CLN3-216ENST00000565316 DGCR2P98153 550 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 GPR50Q13585 617 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 CT45A1Q5HYN5 189 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 STEAP3Q658P3 488 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 CDH26Q8IXH8 852 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 CT45A3Q8NHU0 189 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 PGLYRP3Q96LB9 341 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 DUX3Q96PT4 197 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 RAB9BQ9NP90 201 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 STAB2Q8WWQ8 2551 aa13.42□□□□□ -0.26
CLN3-216ENST00000565316 SPINT2O43291 252 aa13.41□□□□□ -0.26
CLN3-216ENST00000565316 CXorf66Q5JRM2 361 aaPredicted RBP13.41□□□□□ -0.26
CLN3-216ENST00000565316 C6orf183Q5T699 404 aa13.41□□□□□ -0.26
CLN3-216ENST00000565316 SYT6Q5T7P8 510 aaPredicted RBP13.41□□□□□ -0.26
CLN3-216ENST00000565316 GLIPR1L1Q6UWM5 242 aa13.41□□□□□ -0.26
CLN3-216ENST00000565316 LYPD6Q86Y78 171 aa13.41□□□□□ -0.26
CLN3-216ENST00000565316 OR8U1Q8NH10 309 aa13.41□□□□□ -0.26
CLN3-216ENST00000565316 MUL1Q969V5 352 aa13.41□□□□□ -0.26
CLN3-216ENST00000565316 TMEM80Q96HE8 168 aa13.41□□□□□ -0.26
CLN3-216ENST00000565316 RASL11BQ9BPW5 248 aa13.41□□□□□ -0.26
CLN3-216ENST00000565316 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLN3-216ENST00000565316 ETAA1Q9NY74 926 aa13.41□□□□□ -0.26
CLN3-216ENST00000565316 MRPS28Q9Y2Q9 187 aaKnown RBP13.41□□□□□ -0.26
CLN3-216ENST00000565316 FAM90A10PA6NDY2 464 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 FAM90A7PA6NKC0 464 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 FAM90A23PA8MXZ1 464 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 LANCL1O43813 399 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 RRP9O43818 475 aaKnown RBP13.4□□□□□ -0.26
CLN3-216ENST00000565316 CA11O75493 328 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 SC5DO75845 299 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 IGHG4P01861 327 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 HBZP02008 142 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 IGF1P05019 195 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 GLAP06280 429 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 F2RL1P55085 397 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 RAB12Q6IQ22 244 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 TRAT1Q6PIZ9 186 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 LCNL1Q6ZST4 164 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 OR1L1Q8NH94 360 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 HSPB9Q9BQS6 159 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 GNG12Q9UBI6 72 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 TRAPPC2LQ9UL33 140 aa13.4□□□□□ -0.26
CLN3-216ENST00000565316 RAMP3O60896 148 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 RCC1P18754 421 aaPredicted RBP13.39□□□□□ -0.27
CLN3-216ENST00000565316 SOX6P35712 828 aa13.39□□□□□ -0.27
CLN3-216ENST00000565316 DEFB136Q30KP8 78 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms