RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CD24P25063 80 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 NFYBP25208 207 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 GNG10P50151 68 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 VBP1P61758 197 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 HMGN3Q15651 99 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 SSX2Q16385 188 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 LY6EQ16553 131 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 HLA-DRB5Q30154 266 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 MIDNQ504T8 468 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 Q6ZS46 218 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 DTX3Q8N9I9 347 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 OR13D1Q8NGV5 346 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 ZNF596Q8TC21 504 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 LGALS14Q8TCE9 139 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 MAFIPQ8WZ33 124 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 ARL11Q969Q4 196 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 KCTD7Q96MP8 289 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 CLEC7AQ9BXN2 247 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 HEXA-AS1Q9H8Q6 139 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 OR6C3Q9NZP0 311 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 C1RLQ9NZP8 487 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 HILPDAQ9Y5L2 63 aa7.42□□□□□ -1.22
VPS35-206ENST00000565228 BUB1B-PAK6H3BSN5 160 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 J3QR06 171 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 ORC5O43913 435 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 SSX5O60225 188 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 GPR137BO60478 399 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 GLAP06280 429 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 SCTP09683 121 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 CD3GP09693 182 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 GNB3P16520 340 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 SRSF4Q08170 494 aaKnown RBP7.41□□□□□ -1.22
VPS35-206ENST00000565228 DYNC1I2Q13409 638 aaKnown RBP7.41□□□□□ -1.22
VPS35-206ENST00000565228 HERPUD1Q15011 391 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 CT45A1Q5HYN5 189 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 C16orf87Q6PH81 154 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 TPRA1Q86W33 373 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 ODF3L1Q8IXM7 274 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 OR10V1Q8NGI7 309 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 CT45A3Q8NHU0 189 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 NDNFQ8TB73 568 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 NEK7Q8TDX7 302 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 TMEM158Q8WZ71 300 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 ST6GALNAC6Q969X2 333 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 SSX3Q99909 188 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 GAL3ST2Q9H3Q3 398 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 TAF9BQ9HBM6 251 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 GFOD1Q9NXC2 390 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 ZNF230Q9UIE0 474 aaPredicted RBP7.41□□□□□ -1.22
VPS35-206ENST00000565228 RAB22AQ9UL26 194 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 HSF4Q9ULV5 492 aa7.41□□□□□ -1.22
VPS35-206ENST00000565228 PKD1L1Q8TDX9 2849 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 TRBV6-6A0A0A6YYG2 114 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 A0A1W2PPH5 198 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 A0A1W2PPI3 338 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 FUOMA2VDF0 154 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 A6NDX4 124 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 VGLL3A8MV65 326 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 ZNF736B4DX44 427 aaPredicted RBP7.4□□□□□ -1.22
VPS35-206ENST00000565228 TRIM77I1YAP6 450 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 WIPF1O43516 503 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 PROP1O75360 226 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 GABARAPO95166 117 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 FBP1P09467 338 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 HKR1P10072 659 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 RAB6AP20340 208 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 MDKP21741 143 aaPredicted RBP7.4□□□□□ -1.22
VPS35-206ENST00000565228 SPCS2Q15005 226 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 AWAT1Q58HT5 328 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 IDNKQ5T6J7 187 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 TPTE2P1Q5T6R2 138 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 Q6ZSV7 163 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 Q6ZTK2 550 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 TMEM219Q86XT9 240 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 ANKRD13BQ86YJ7 626 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 PRR18Q8N4B5 295 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 ZNF565Q8N9K5 539 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 OR10R2Q8NGX6 335 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 ZFAND2BQ8WV99 257 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 CFHR4Q92496 578 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 NEDD4LQ96PU5 975 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 MRPS26Q9BYN8 205 aaKnown RBP7.4□□□□□ -1.22
VPS35-206ENST00000565228 SPACA1Q9HBV2 294 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 Q9N2K0 584 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 PCDHB16Q9NRJ7 776 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 PLEKHJ1Q9NW61 149 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 OR1A1Q9P1Q5 309 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 TRAPPC2LQ9UL33 140 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 SIGLEC9Q9Y336 463 aa7.4□□□□□ -1.22
VPS35-206ENST00000565228 TBL2Q9Y4P3 447 aaKnown RBP7.4□□□□□ -1.22
VPS35-206ENST00000565228 PLXNB1O43157 2135 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 A0A075B6Q4 140 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 SH2D7A6NKC9 451 aaPredicted RBP7.39□□□□□ -1.23
VPS35-206ENST00000565228 FAM90A9PA6NNJ1 464 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 SDCBPO00560 298 aaPredicted RBP7.39□□□□□ -1.23
VPS35-206ENST00000565228 AMY1AP04745 511 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 AMY2AP04746 511 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 HIST1H1DP16402 221 aaKnown RBP7.39□□□□□ -1.23
VPS35-206ENST00000565228 GZMHP20718 246 aa7.39□□□□□ -1.23
VPS35-206ENST00000565228 PPP1CCP36873 323 aaKnown RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms