RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 TIMP4Q99727 224 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 ITGB4P16144 1822 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 A0A0J9YY10 115 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 LMX1BO60663 402 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 TBX6O95947 436 aaPredicted RBP5.5□□□□□ -1.53
CLK3-212ENST00000563418 PSG1P11464 419 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 GAGE2BQ13066 116 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 SRSF9Q13242 221 aaKnown RBP eCLIP5.5□□□□□ -1.53
CLK3-212ENST00000563418 GAGE2EQ4V326 116 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 ZNF542PQ5EBM4 170 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 PLPP4Q5VZY2 271 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 PIGCQ92535 297 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 SH3BGRL3Q9H299 93 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 C20orf141Q9NUB4 165 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 IL36BQ9NZH7 164 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 GAGE2DQ9UEU5 116 aa5.5□□□□□ -1.53
CLK3-212ENST00000563418 CNTRLQ7Z7A1 2325 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 IGHV2-70DA0A0C4DH43 119 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 ZNF205O95201 554 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 CEACAM1P13688 526 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 APLNRP35414 380 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TMEM50BP56557 158 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 JAG1P78504 1218 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 KISS1Q15726 138 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 IBA57Q5T440 356 aaKnown RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 LINC01551Q86U37 167 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 PIGTQ969N2 578 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 COL14A1Q05707 1796 aaKnown RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 ARID2Q68CP9 1835 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 COX6CP09669 75 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TBC1D26Q86UD7 250 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 CLDN23Q96B33 292 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 HRASLS2Q9NWW9 162 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 MTCL1Q9Y4B5 1905 aaKnown RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 H0Y980 276 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TIMP2P16035 220 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TWIST1Q15672 202 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TUSC5Q8IXB3 177 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 LIPHQ8WWY8 451 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 SIRT4Q9Y6E7 314 aaPredicted RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 TMEM8BA6NDV4 472 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 LDB3O75112 727 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TSPAN13O95857 204 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 C1QTNF9P0C862 333 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 RBPJQ06330 500 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TMEM252Q8N6L7 170 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 WNT10AQ9GZT5 417 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 NRAPQ86VF7 1730 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 LOC285556D6RIA3 1793 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 SPTBP11277 2137 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 A0A0G2JLM5 398 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 GJB3O75712 270 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TYMSP04818 313 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 FAM157CP0CG43 387 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 GAGE13Q4V321 117 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 OR5AS1Q8N127 324 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 C10orf111Q8N326 155 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 SLC25A28Q96A46 364 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 GPR35Q9HC97 309 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 POLR3KQ9Y2Y1 108 aaPredicted RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 ENSAO43768 121 aaKnown RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 SPINK4O60575 86 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 ZNF217O75362 1048 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 ACRP10323 421 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 APOBEC3AP31941 199 aaPredicted RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 MFAP2P55001 183 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 LYZL2Q7Z4W2 148 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 HSD11B1LQ7Z5J1 315 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 ANKRD10Q9NXR5 420 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TRIP12Q14669 1992 aaPredicted RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 A8MWL6 223 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 COX7A2P2O60397 106 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 ZNF865P0CJ78 1059 aaPredicted RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 CLDN2P57739 230 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 MLF2Q15773 248 aaPredicted RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 LINC01559Q495D7 138 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 OR4P4Q8NGL7 312 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 OR1L4Q8NGR5 311 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 ST8SIA1Q92185 356 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 HIST1H4GQ99525 98 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 MAP1LC3AQ9H492 121 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 CD207Q9UJ71 328 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 KBTBD11-OT1A0A1B0GTJ5 212 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 PTGESO14684 152 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 PPIHO43447 177 aaKnown RBP5.49□□□□□ -1.53
CLK3-212ENST00000563418 EFNB2P52799 333 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 TXNDC8Q6A555 127 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 FGF13Q92913 245 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 SLC7A10Q9NS82 523 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 CACNG4Q9UBN1 327 aa5.49□□□□□ -1.53
CLK3-212ENST00000563418 A0A1W2PR48 441 aa5.48□□□□□ -1.53
CLK3-212ENST00000563418 FAM221AA4D161 298 aa5.48□□□□□ -1.53
CLK3-212ENST00000563418 PDCD6O75340 191 aa5.48□□□□□ -1.53
CLK3-212ENST00000563418 CD300EQ496F6 205 aaPredicted RBP5.48□□□□□ -1.53
CLK3-212ENST00000563418 TMEM215Q68D42 235 aa5.48□□□□□ -1.53
CLK3-212ENST00000563418 RASL11AQ6T310 242 aa5.48□□□□□ -1.53
CLK3-212ENST00000563418 FBXL14Q8N1E6 418 aa5.48□□□□□ -1.53
CLK3-212ENST00000563418 C11orf40Q8WZ69 217 aa5.48□□□□□ -1.53
CLK3-212ENST00000563418 RCC1LQ96I51 464 aaKnown RBP5.48□□□□□ -1.53
CLK3-212ENST00000563418 SPXQ9BT56 116 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms