RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TRBV5-7A0A0A0MS05 114 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 C12orf77C9JDV5 145 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 FGF16O43320 207 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 RCN1Q15293 331 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 YIF1BQ5BJH7 314 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 AWAT2Q6E213 333 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 C5orf24Q7Z6I8 188 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 IZUMO1Q8IYV9 350 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 OR1L1Q8NH94 360 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 GPR61Q9BZJ8 451 aa14.96□□□□□ -0.01
VPS35-202ENST00000561713 PAK1IP1Q9NWT1 392 aaPredicted RBP14.96□□□□□ -0.01
VPS35-202ENST00000561713 RCC2Q9P258 522 aaKnown RBP14.96□□□□□ -0.01
VPS35-202ENST00000561713 RYR2Q92736 4967 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 NCBP2LA6PVI3 153 aaKnown RBP14.95□□□□□ -0.02
VPS35-202ENST00000561713 MT-ND4P03905 459 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 ADARB1P78563 741 aaKnown RBP14.95□□□□□ -0.02
VPS35-202ENST00000561713 ST3GAL4Q11206 333 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 RAB12Q6IQ22 244 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 LAIR2Q6ISS4 152 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 AHSA2Q719I0 299 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 STPG2Q8N412 459 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 Q8N6K4 173 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 TMEM104Q8NE00 496 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 SETD9Q8NE22 299 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 CHPT1Q8WUD6 406 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 RTN4IP1Q8WWV3 396 aaPredicted RBP14.95□□□□□ -0.02
VPS35-202ENST00000561713 FAM46BQ96A09 425 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 DERL3Q96Q80 235 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 CHCHD3Q9NX63 227 aaKnown RBP14.95□□□□□ -0.02
VPS35-202ENST00000561713 ETAA1Q9NY74 926 aa14.95□□□□□ -0.02
VPS35-202ENST00000561713 DYNC2H1Q8NCM8 4307 aaKnown RBP14.94□□□□□ -0.02
VPS35-202ENST00000561713 IGHG2P01859 326 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 GAPDHP04406 335 aaKnown RBP14.94□□□□□ -0.02
VPS35-202ENST00000561713 GPR12P47775 334 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 THBS3P49746 956 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 GNMTQ14749 295 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 DEFB136Q30KP8 78 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 SYT6Q5T7P8 510 aaPredicted RBP14.94□□□□□ -0.02
VPS35-202ENST00000561713 TTC23Q5W5X9 447 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 SLC16A12Q6ZSM3 486 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 STX19Q8N4C7 294 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 DHRSXQ8N5I4 330 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 LINC00311Q8N616 119 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 SELENOIQ9C0D9 397 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 GNG12Q9UBI6 72 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 TRAPPC2LQ9UL33 140 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 DNAH7Q8WXX0 4024 aa14.94□□□□□ -0.02
VPS35-202ENST00000561713 UBE2QL1A1L167 161 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 ZNF780AO75290 641 aaPredicted RBP14.93□□□□□ -0.02
VPS35-202ENST00000561713 GPX5O75715 221 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 CRTAPO75718 401 aaPredicted RBP14.93□□□□□ -0.02
VPS35-202ENST00000561713 HBZP02008 142 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 MGMTP16455 207 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 RCC1P18754 421 aaPredicted RBP14.93□□□□□ -0.02
VPS35-202ENST00000561713 GZMHP20718 246 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 MED21Q13503 144 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 INSL4Q14641 139 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 FOXRED2Q8IWF2 684 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 Q8N9W7 124 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 ZNF439Q8NDP4 499 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 OR51D1Q8NGF3 324 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 OR52M1Q8NGK5 317 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 TFAP2CQ92754 450 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 ST6GALNAC6Q969X2 333 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 HSPB9Q9BQS6 159 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 KCNK15Q9H427 330 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 PEX16Q9Y5Y5 336 aa14.93□□□□□ -0.02
VPS35-202ENST00000561713 MCRIP1C9JLW8 97 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 MYL12BO14950 172 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 ORC5O43913 435 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 RPLP1P05386 114 aaKnown RBP14.92□□□□□ -0.02
VPS35-202ENST00000561713 CELP19835 753 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 IL3RAP26951 378 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 ZNF134P52741 427 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 RAB25P57735 213 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 DCTN2Q13561 401 aaKnown RBP14.92□□□□□ -0.02
VPS35-202ENST00000561713 EBI3Q14213 229 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 TGIF2LXQ8IUE1 241 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 OR2T10Q8NGZ9 312 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 U3KQK5 164 aa14.92□□□□□ -0.02
VPS35-202ENST00000561713 NHLRC4P0CG21 123 aaPredicted RBP14.91□□□□□ -0.02
VPS35-202ENST00000561713 MYF6P23409 242 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 CAPGP40121 348 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 TAS2R43P59537 309 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 SLC35B1P78383 322 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 CT45A1Q5HYN5 189 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 NKAPLQ5M9Q1 402 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 FAM27D1Q5T7N8 215 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 SIGIRRQ6IA17 410 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 SLC25A48Q6ZT89 311 aaKnown RBP14.91□□□□□ -0.02
VPS35-202ENST00000561713 PACRGLQ8N7B6 248 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 CT45A3Q8NHU0 189 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 Q96M66 194 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 MCRIP2Q9BUT9 160 aaKnown RBP14.91□□□□□ -0.02
VPS35-202ENST00000561713 SPACA1Q9HBV2 294 aa14.91□□□□□ -0.02
VPS35-202ENST00000561713 LIN7CQ9NUP9 197 aaKnown RBP14.91□□□□□ -0.02
VPS35-202ENST00000561713 EFCAB10A6NFE3 127 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 SPINT2O43291 252 aa14.9□□□□□ -0.02
VPS35-202ENST00000561713 SLC2A2P11168 524 aaPredicted RBP14.9□□□□□ -0.02
VPS35-202ENST00000561713 WNT4P56705 351 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms