RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 COL7A1Q02388 2944 aa9.14□□□□□ -0.95
USP3-220ENST00000561381 TRAV8-7A0A075B6U6 113 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 A6NJY4 79 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 H0YHG0 523 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 AIPO00170 330 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 CCL24O00175 119 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 AP4M1O00189 453 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 OGG1O15527 345 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 IGFBP3P17936 291 aaPredicted RBP9.13□□□□□ -0.95
USP3-220ENST00000561381 ZNF134P52741 427 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 RIPK1Q13546 671 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 MPV17LQ2QL34 196 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 TEX38Q6PEX7 206 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 ZNF497Q6ZNH5 498 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 TGIF2LXQ8IUE1 241 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 PQLC1Q8N2U9 271 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 COMMD1Q8N668 190 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 ZFP41Q8N8Y5 198 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 OR52M1Q8NGK5 317 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 OR2T10Q8NGZ9 312 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 NEK7Q8TDX7 302 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 TFAP2CQ92754 450 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 SMIM19Q96E16 107 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 S100A13Q99584 98 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 B9D2Q9BPU9 175 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 HSPB9Q9BQS6 159 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 MCRIP2Q9BUT9 160 aaKnown RBP9.13□□□□□ -0.95
USP3-220ENST00000561381 GPR61Q9BZJ8 451 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 DCLRE1BQ9H816 532 aa9.13□□□□□ -0.95
USP3-220ENST00000561381 LIN7CQ9NUP9 197 aaKnown RBP9.13□□□□□ -0.95
USP3-220ENST00000561381 TRBV5-5A0A0J9YX44 114 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 A0A1W2PPK0 400 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 C12orf77C9JDV5 145 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 ORC5O43913 435 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 MOSP00540 346 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 GTF2F2P13984 249 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 DCKP27707 260 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 SLC6A1P30531 599 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 LUMP51884 338 aaPredicted RBP9.12□□□□□ -0.95
USP3-220ENST00000561381 F2RL1P55085 397 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 RPS11P62280 158 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP3-220ENST00000561381 PNLIPRP3Q17RR3 467 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 SYT6Q5T7P8 510 aaPredicted RBP9.12□□□□□ -0.95
USP3-220ENST00000561381 DMKNQ6E0U4 476 aaPredicted RBP9.12□□□□□ -0.95
USP3-220ENST00000561381 TMPRSS11AQ6ZMR5 421 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 C5orf24Q7Z6I8 188 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 LINC00596Q86U02 117 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 C8orf31Q8N9H6 132 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 ZNF439Q8NDP4 499 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 OR10V1Q8NGI7 309 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 OR4K15Q8NH41 348 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 OR1L1Q8NH94 360 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 GHSRQ92847 366 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 MUL1Q969V5 352 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 S1PR3Q99500 378 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 PAK1IP1Q9NWT1 392 aaPredicted RBP9.12□□□□□ -0.95
USP3-220ENST00000561381 BABAM2Q9NXR7 383 aa9.12□□□□□ -0.95
USP3-220ENST00000561381 ZNF780AO75290 641 aaPredicted RBP9.11□□□□□ -0.95
USP3-220ENST00000561381 CD1BP29016 333 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 VHLP40337 213 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 DGCR2P98153 550 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 CFHR3Q02985 330 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 GPR50Q13585 617 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 CT45A1Q5HYN5 189 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 CXorf66Q5JRM2 361 aaPredicted RBP9.11□□□□□ -0.95
USP3-220ENST00000561381 GLIPR1L1Q6UWM5 242 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 UNQ9370/PRO34162Q6UXP9 181 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 SLC25A48Q6ZT89 311 aaKnown RBP9.11□□□□□ -0.95
USP3-220ENST00000561381 PRR18Q8N4B5 295 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 STX19Q8N4C7 294 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 ZNF485Q8NCK3 441 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 CT45A3Q8NHU0 189 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 PGLYRP3Q96LB9 341 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 OR14A2Q96R54 314 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 RASL11BQ9BPW5 248 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 BANF2Q9H503 90 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.11□□□□□ -0.95
USP3-220ENST00000561381 SMPD3Q9NY59 655 aaPredicted RBP9.11□□□□□ -0.95
USP3-220ENST00000561381 RCC2Q9P258 522 aaKnown RBP9.11□□□□□ -0.95
USP3-220ENST00000561381 TRAPPC2LQ9UL33 140 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 DIMT1Q9UNQ2 313 aaKnown RBP9.11□□□□□ -0.95
USP3-220ENST00000561381 NBEAL2Q6ZNJ1 2754 aa9.11□□□□□ -0.95
USP3-220ENST00000561381 TRBV5-7A0A0A0MS05 114 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 PNMA8CA0A1B0GUJ8 204 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 MCRIP1C9JLW8 97 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 GPX5O75715 221 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 BAG2O95816 211 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 HBZP02008 142 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 RCC1P18754 421 aaPredicted RBP9.1□□□□□ -0.95
USP3-220ENST00000561381 MYL12AP19105 171 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 IL3RAP26951 378 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 ZNF137PP52743 207 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 ADARB1P78563 741 aaKnown RBP9.1□□□□□ -0.95
USP3-220ENST00000561381 FOXE3Q13461 319 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 DOC2BQ14184 412 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 GNMTQ14749 295 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 KIR2DS1Q14954 304 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 Q499Y3 187 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 RAB12Q6IQ22 244 aa9.1□□□□□ -0.95
USP3-220ENST00000561381 JAGN1Q8N5M9 183 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms