RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	FUT3	P21217	361 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	GPR50	Q13585	617 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	RNLS	Q5VYX0	342 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445		Q6ZS46	218 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	MOB3B	Q86TA1	216 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	ZFP41	Q8N8Y5	198 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	ZNF485	Q8NCK3	441 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	OR13C5	Q8NGS8	318 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	PHYHIP	Q92561	330 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	TFAP2C	Q92754	450 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	LEAP2	Q969E1	77 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	ZFP57	Q9NU63	452 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	GFOD1	Q9NXC2	390 aa		11.21	□□□□□ -0.61
TPM1-223	ENST00000560445	TRAV8-7	A0A075B6U6	113 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	IGHV1-3	A0A0C4DH29	117 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	PNMA8C	A0A1B0GUJ8	204 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	ADARB2-AS1	A8MUL3	147 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	CRTAP	O75718	401 aa	Predicted RBP	11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	MAS1	P04201	325 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	MGMT	P16455	207 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	CD1B	P29016	333 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	RPS11	P62280	158 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	DCTN2	Q13561	401 aa	Known RBP	11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	FBLN7	Q53RD9	439 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	GLT8D1	Q68CQ7	371 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	SLC35E3	Q7Z769	313 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	TGIF2LX	Q8IUE1	241 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	NANOGP1	Q8N7R0	232 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	C5orf56	Q8N8D9	126 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	WFDC9	Q8NEX5	89 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	FBLIM1	Q8WUP2	373 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	MCRIP2	Q9BUT9	160 aa	Known RBP	11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	SELENOI	Q9C0D9	397 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	VCX3B	Q9H321	246 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	LIN7C	Q9NUP9	197 aa	Known RBP	11.2	□□□□□ -0.62
TPM1-223	ENST00000560445	PEX16	Q9Y5Y5	336 aa		11.2	□□□□□ -0.62
TPM1-223	ENST00000560445		A0A1W2PPK0	400 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	PTGES3L	E9PB15	166 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	C15orf65	H3BRN8	121 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	AP4M1	O00189	453 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	PDCD6	O75340	191 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	IGHV3-7	P01780	117 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	AMY1A	P04745	511 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	AMY2A	P04746	511 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	GP2	P55259	537 aa	Known RBP	11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	EBI3	Q14213	229 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	SYT6	Q5T7P8	510 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	CCDC107	Q8WV48	283 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	NEDD4L	Q96PU5	975 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	ABRACL	Q9P1F3	81 aa		11.19	□□□□□ -0.62
TPM1-223	ENST00000560445	NCBP2L	A6PVI3	153 aa	Known RBP	11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	C12orf77	C9JDV5	145 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	SC5D	O75845	299 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	MOS	P00540	346 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	IGHG2	P01859	326 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	ZNF137P	P52743	207 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	LOXL3	P58215	753 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	C6orf141	Q5SZD1	244 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	GAPT	Q8N292	157 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	MRAP	Q8TCY5	172 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	PHF21A	Q96BD5	680 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	ORAI1	Q96D31	301 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445		Q96M66	194 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	RASL11B	Q9BPW5	248 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	JPT1	Q9UK76	154 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	TPRKB	Q9Y3C4	175 aa		11.18	□□□□□ -0.62
TPM1-223	ENST00000560445	NUDT19	A8MXV4	375 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445		H0YHG0	523 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	BPNT1	O95861	308 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	CDK1	P06493	297 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	OR5H8	P0DN80	308 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	PSMA1	P25786	263 aa	Known RBP	11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	GABPB1	Q06547	395 aa	Predicted RBP	11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	HNF4G	Q14541	408 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	SPHAR	Q15513	63 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	TRAM1	Q15629	374 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	OXLD1	Q5BKU9	147 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	RBM48	Q5RL73	367 aa	Known RBP	11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	LAIR2	Q6ISS4	152 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	TEX38	Q6PEX7	206 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	SLC25A48	Q6ZT89	311 aa	Known RBP	11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	MOB1B	Q7L9L4	216 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	KCNG3	Q8TAE7	436 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	EAF1	Q96JC9	268 aa	Predicted RBP	11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	TMEM59	Q9BXS4	323 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	OR2S2	Q9NQN1	319 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	FKBP14	Q9NWM8	211 aa		11.17	□□□□□ -0.62
TPM1-223	ENST00000560445	TRAV39	A0A0B4J263	110 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445		A0A1W2PP11	408 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	MAGEA13P	A6NCF6	341 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	LANCL1	O43813	399 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	HBZ	P02008	142 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	REG1B	P48304	166 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	RPL23A	P62750	156 aa	Known RBP	11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	HTD2	P86397	168 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	MED22	Q15528	200 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	ACSM3	Q53FZ2	586 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	HSD17B12	Q53GQ0	312 aa		11.16	□□□□□ -0.62
TPM1-223	ENST00000560445	TCTEX1D4	Q5JR98	221 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms