RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SLC35E4Q6ICL7 350 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 CLRN3Q8NCR9 226 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 SCARB1Q8WTV0 552 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 COQ2Q96H96 371 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 GAFA1Q96PS6 74 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 DNTTIP1Q9H147 329 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 MYOZ1Q9NP98 299 aaPredicted RBP9.36□□□□□ -0.91
USP3-218ENST00000560202 TRAPPC2LQ9UL33 140 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 DYSFO75923 2080 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 NKX6-3A6NJ46 265 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 OVOL3O00110 214 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 MGST3O14880 152 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 TK1P04183 234 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 GIPP09681 153 aaPredicted RBP9.36□□□□□ -0.91
USP3-218ENST00000560202 RCC1P18754 421 aaPredicted RBP9.36□□□□□ -0.91
USP3-218ENST00000560202 PAX5Q02548 391 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 ZMYND11Q15326 602 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 KRBOX4Q5JUW0 171 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 METTL11BQ5VVY1 283 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 DUX4L9Q6RFH8 374 aaPredicted RBP9.36□□□□□ -0.91
USP3-218ENST00000560202 STPG2Q8N412 459 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 ARRDC1Q8N5I2 433 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 CCDC107Q8WV48 283 aa9.36□□□□□ -0.91
USP3-218ENST00000560202 RAI1Q7Z5J4 1906 aaPredicted RBP9.35□□□□□ -0.91
USP3-218ENST00000560202 UTP20O75691 2785 aaKnown RBP9.35□□□□□ -0.91
USP3-218ENST00000560202 TRAV39A0A0B4J263 110 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 KIR2DS1A0A191URI9 304 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 TRDCB7Z8K6 153 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 SDCBPO00560 298 aaPredicted RBP9.35□□□□□ -0.91
USP3-218ENST00000560202 TNFRSF13BO14836 293 aaPredicted RBP9.35□□□□□ -0.91
USP3-218ENST00000560202 SIGLEC5O15389 551 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 TMPRSS2O15393 492 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 NDUFB6O95139 128 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 FSTL3O95633 263 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 F12P00748 615 aaPredicted RBP9.35□□□□□ -0.91
USP3-218ENST00000560202 SELLP14151 372 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 KIR2DS4P43632 304 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 GLIPR1P48060 266 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 IL13RA1P78552 427 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 EDDM3AQ14507 147 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 KIR2DS1Q14954 304 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 TUSC1Q2TAM9 212 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 SCGB2B2Q4G0G5 96 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 MOB1BQ7L9L4 216 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 PEG10Q86TG7 708 aaKnown RBP9.35□□□□□ -0.91
USP3-218ENST00000560202 ZNF295-AS1Q8N0V1 137 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 FAM216BQ8N7L0 139 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 TMEM185AQ8NFB2 350 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 OR5D13Q8NGL4 314 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 OR2T35Q8NGX2 323 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 IGFBPL1Q8WX77 278 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 DACT3Q96B18 629 aaPredicted RBP9.35□□□□□ -0.91
USP3-218ENST00000560202 PRRT1Q99946 306 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 FAM234AQ9H0X4 552 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 MBNL3Q9NUK0 354 aaKnown RBP9.35□□□□□ -0.91
USP3-218ENST00000560202 NECAP2Q9NVZ3 263 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 SLC2A8Q9NY64 477 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 EHFQ9NZC4 300 aa9.35□□□□□ -0.91
USP3-218ENST00000560202 LRRK2Q5S007 2527 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 SPTAN1Q13813 2472 aaKnown RBP9.34□□□□□ -0.91
USP3-218ENST00000560202 DCHS2Q6V1P9 2916 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 HMSDA8MTL9 139 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 SSNA1O43805 119 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 NDUFS7O75251 213 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 RGS11O94810 467 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 SCTP09683 121 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 COL8A1P27658 744 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 EFNA4P52798 201 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 TSPAN5P62079 268 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 HLA-DRB3P79483 266 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 RBMS2Q15434 407 aaKnown RBP9.34□□□□□ -0.91
USP3-218ENST00000560202 SLC36A1Q7Z2H8 476 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 C5orf24Q7Z6I8 188 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 TMEM17Q86X19 198 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 TPRX1Q8N7U7 411 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 BVESQ8NE79 360 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 LINC00052Q96N35 136 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 CCL19Q99731 98 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 GINS4Q9BRT9 223 aa9.34□□□□□ -0.91
USP3-218ENST00000560202 TENM4Q6N022 2769 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 TRAV6A0A075B6T7 132 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 ZNF98A6NK75 572 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 L7N2F9 121 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 ADAM20O43506 726 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 IGHV2-70P01814 119 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 H2AFB1P0C5Y9 115 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 OR5H8P0DN80 308 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 EDDM3BP56851 147 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 SEC61A1P61619 476 aaKnown RBP9.33□□□□□ -0.92
USP3-218ENST00000560202 IGSF11Q5DX21 431 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 LYPD2Q6UXB3 125 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 OR13C8Q8NGS7 320 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 MARC2Q969Z3 335 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 C14orf79Q96F83 325 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 SLC25A21Q9BQT8 299 aaPredicted RBP9.33□□□□□ -0.92
USP3-218ENST00000560202 C20orf85Q9H1P6 137 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 CHODLQ9H9P2 273 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 GPN1Q9HCN4 374 aaPredicted RBP9.33□□□□□ -0.92
USP3-218ENST00000560202 KAAG1Q9UBP8 84 aa9.33□□□□□ -0.92
USP3-218ENST00000560202 FLVCR2Q9UPI3 526 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms