RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 SIRT4Q9Y6E7 314 aaPredicted RBP8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 KMT2CQ8NEZ4 4911 aaKnown RBP8.72□□□□□ -1.01
CCDC88C-213ENST00000557455 MCRIP1C9JLW8 97 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 SPINT2O43291 252 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 TXNL1O43396 289 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 BAG2O95816 211 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 MOSP00540 346 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 RPLP1P05386 114 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 IGFBP3P17936 291 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 CD1BP29016 333 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 RAB25P57735 213 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 DCTN2Q13561 401 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 Q3ZCU0 254 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 Q499Y3 187 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 CXorf66Q5JRM2 361 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 SYT6Q5T7P8 510 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 FAM53AQ6NSI3 398 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 Q8N6K4 173 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 Q8N9W7 124 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 GHSRQ92847 366 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 ST6GALNAC6Q969X2 333 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 RAX2Q96IS3 184 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 RDH12Q96NR8 316 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 DUX3Q96PT4 197 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 S1PR3Q99500 378 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 B9D2Q9BPU9 175 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 RASL11BQ9BPW5 248 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 CHCHD3Q9NX63 227 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 SMPD3Q9NY59 655 aaPredicted RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 GNG12Q9UBI6 72 aa8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 DIMT1Q9UNQ2 313 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 EXOSC1Q9Y3B2 195 aaKnown RBP8.71□□□□□ -1.02
CCDC88C-213ENST00000557455 TRBV5-5A0A0J9YX44 114 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 MAGEA13PA6NCF6 341 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 ZNF736B4DX44 427 aaPredicted RBP8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 C12orf77C9JDV5 145 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 CCL24O00175 119 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 SLC31A2O15432 143 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 GPX5O75715 221 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 LALBAP00709 142 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 ELANEP08246 267 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 GP2P55259 537 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 DGCR2P98153 550 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 MED21Q13503 144 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 GPR50Q13585 617 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 YIF1BQ5BJH7 314 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 C6orf183Q5T699 404 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 DMKNQ6E0U4 476 aaPredicted RBP8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 GLIPR1L1Q6UWM5 242 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 SLC25A48Q6ZT89 311 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 PRR18Q8N4B5 295 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 JAGN1Q8N5M9 183 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 TMEM104Q8NE00 496 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 OR8H1Q8NGG4 311 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 OR8U1Q8NH10 309 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 OR4K15Q8NH41 348 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 MUL1Q969V5 352 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 MRPS24Q96EL2 167 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 TMEM80Q96HE8 168 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 DCLRE1BQ9H816 532 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 PLSCR3Q9NRY6 295 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 ETAA1Q9NY74 926 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 RCC2Q9P258 522 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 CLEC2DQ9UHP7 191 aa8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 MRPS28Q9Y2Q9 187 aaKnown RBP8.7□□□□□ -1.02
CCDC88C-213ENST00000557455 NBEAL2Q6ZNJ1 2754 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 TRAV8-7A0A075B6U6 113 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 RAMP3O60896 148 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 HBZP02008 142 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 VDAC1P21796 283 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 SOX6P35712 828 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 CDX1P47902 265 aaPredicted RBP8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 ZNF134P52741 427 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 RPS11P62280 158 aaKnown RBP eCLIP8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 FOXE3Q13461 319 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 DEFB136Q30KP8 78 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 TMEM30BQ3MIR4 351 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 AWAT2Q6E213 333 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 RAB12Q6IQ22 244 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 TRAT1Q6PIZ9 186 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 LCNL1Q6ZST4 164 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 ZFP41Q8N8Y5 198 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 ZNF439Q8NDP4 499 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 OR10V1Q8NGI7 309 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 OR5M8Q8NGP6 311 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 TFAP2CQ92754 450 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 PGLYRP3Q96LB9 341 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 OR14A2Q96R54 314 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 PEX16Q9Y5Y5 336 aa8.69□□□□□ -1.02
CCDC88C-213ENST00000557455 A0A1W2PPK0 400 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 CA11O75493 328 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 CRTAPO75718 401 aaPredicted RBP8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 MAS1P04201 325 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 FSTP19883 344 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 ZNF137PP52743 207 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 F2RL1P55085 397 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 KIR2DS1Q14954 304 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 CT45A1Q5HYN5 189 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 C9orf66Q5T8R8 295 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 TTC23Q5W5X9 447 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms