RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 KIR2DS4P43632 304 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 KIR2DS1Q14954 304 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 C3orf36Q3SXR2 165 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 C11orf87Q6NUJ2 197 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 WDR73Q6P4I2 378 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 TMEM108Q6UXF1 575 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 GCSAMQ8N6F7 178 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 COQ2Q96H96 371 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 RSRP1Q9BUV0 290 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 COMMD9Q9P000 198 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 KIF25Q9UIL4 384 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 HIVEP3Q5T1R4 2406 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 CCL21O00585 134 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 ECI1P42126 302 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 EXOSC2Q13868 293 aaKnown RBP10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 TMEM187Q14656 261 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 ANGPTL6Q8NI99 470 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 SLC5A7Q9GZV3 580 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 RHOFQ9HBH0 211 aa10.7□□□□□ -0.7
VIPAS39-206ENST00000553888 SPTBN1Q01082 2364 aaKnown RBP10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 TRBV6-6A0A0A6YYG2 114 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 HMSDA8MTL9 139 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 B9A039 149 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 PHF1O43189 567 aaPredicted RBP10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 IGHV1-46P01743 117 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 RNF224P0DH78 156 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 CD200P41217 278 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 OR3A1P47881 315 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 LYZL2Q7Z4W2 148 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 GLYATL2Q8WU03 294 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 TAF9BQ9HBM6 251 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 RAB18Q9NP72 206 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 ERRFI1Q9UJM3 462 aaPredicted RBP10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 ARFGEF3Q5TH69 2177 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 IGKV1D-17A0A075B6S4 117 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 A0A1B0GW55 424 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 ERVH48-1M5A8F1 160 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 TUSC2O75896 110 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DIRAS3O95661 229 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DUX4L2P0CJ85 424 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DUX4L3P0CJ86 424 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DUX4L4P0CJ87 422 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DUX4L5P0CJ88 424 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DUX4L6P0CJ89 424 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DUX4L7P0CJ90 424 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 PSG2P11465 335 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 S100A11P31949 105 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 CD80P33681 288 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 CA7P43166 264 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 GLIPR1P48060 266 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 KCNJ3P48549 501 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 EDDM3AQ14507 147 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 SRSF7Q16629 238 aaKnown RBP eCLIP10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DUX4L9Q6RFH8 374 aaPredicted RBP10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 CCDC28AQ8IWP9 274 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 OR1L1Q8NH94 360 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 OR10J5Q8NHC4 309 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 LINC01560Q8TB33 94 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 OR5AC2Q9NZP5 309 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DUX4Q9UBX2 424 aa10.69□□□□□ -0.7
VIPAS39-206ENST00000553888 DSCAML1Q8TD84 2053 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 TRBV6-7A0A0A0MS04 114 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 RNF222A6NCQ9 220 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 GABRA2P47869 451 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 ADIPOQQ15848 244 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 SMIM21Q3B7S5 101 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 GGNBP1Q5YKI7 109 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 TBC1D26Q86UD7 250 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 C1orf174Q8IYL3 243 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 MRGPRDQ8TDS7 321 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 PIK3IP1Q96FE7 263 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 RNF126Q9BV68 326 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 SHARPINQ9H0F6 387 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 RIMS4Q9H426 269 aaPredicted RBP10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 USF3Q68DE3 2245 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 LINC00587B1AMM8 73 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 CYB5R3P00387 301 aaPredicted RBP10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 OR4A8P0C604 315 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 UCP3P55916 312 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 CCL8P80075 99 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 RAB32Q13637 225 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 OR8H3Q8N146 312 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 OR4A4PQ8NGN8 299 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 RRNAD1Q96FB5 475 aaKnown RBP10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 TNFSF18Q9UNG2 199 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 YLPM1P49750 1951 aaKnown RBP10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 HRNRQ86YZ3 2850 aaPredicted RBP10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 A0A0B4J2A0 478 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 SRRM5B3KS81 715 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 MPPED1O15442 326 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 PTAFRP25105 342 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 LMO1P25800 156 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 PSMB6P28072 239 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 MDH2P40926 338 aaKnown RBP10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 S100A10P60903 97 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 H1FOOQ8IZA3 346 aaPredicted RBP10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 KDF1Q8NAX2 398 aaPredicted RBP10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 ZNRF1Q8ND25 227 aa10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 MSI2Q96DH6 328 aaKnown RBP10.68□□□□□ -0.7
VIPAS39-206ENST00000553888 DNAJB11Q9UBS4 358 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms