RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PET100P0DJ07 73 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 DEFA4P12838 97 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 SSTR5P35346 364 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 PMELP40967 661 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 KIR2DL2P43627 348 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 FGF8P55075 233 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 CLEC12BQ2HXU8 276 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF528Q3MIS6 628 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM42Q69YG0 159 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 FAHD2BQ6P2I3 314 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 LCN15Q6UWW0 184 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 THNSL2Q86YJ6 484 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 PUSL1Q8N0Z8 303 aaKnown RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 ZADH2Q8N4Q0 377 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 OR5A2Q8NGI9 324 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 OR2G3Q8NGZ4 309 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 FAHD2AQ96GK7 314 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 SLX1AQ9BQ83 275 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 RTL8AQ9BWD3 113 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 RPS10P5Q9NQ39 176 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 DCAF16Q9NXF7 216 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF107Q9UII5 783 aaPredicted RBP4.75□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF391Q9UJN7 358 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 EDARQ9UNE0 448 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 PROCRQ9UNN8 238 aa4.75□□□□□ -1.65
LIMA1-215ENST00000552823 IGKV3D-15A0A087WSY6 115 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 TRDCB7Z8K6 153 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 GALR2O43603 387 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 SMPD2O60906 423 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 FGF2P09038 288 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 ZP3P21754 424 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 DYNLT3P51808 116 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 DAZAP2Q15038 168 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 KRBOX4Q5JUW0 171 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 TGIF2LYQ8IUE0 185 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 VKORC1L1Q8N0U8 176 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 ZNRF1Q8ND25 227 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 OR4A4PQ8NGN8 299 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 SNIP1Q8TAD8 396 aaKnown RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 LRRC29Q8WV35 223 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM45BQ96B21 275 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 SHARPINQ9H0F6 387 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 GNG12Q9UBI6 72 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 PSG11Q9UQ72 335 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 AUP1Q9Y679 476 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 CHD3Q12873 2000 aaKnown RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 USP9YO00507 2555 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 KRBOX1C9JBD0 128 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 SHOXO15266 292 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 ATG12O94817 140 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 CLDN1O95832 211 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 G6PCP35575 357 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM211Q6ICI0 200 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 Q6ZRM9 215 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 MOGAT3Q86VF5 341 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 LDLRAD3Q86YD5 345 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 FGFRL1Q8N441 504 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 MRPL30Q8TCC3 161 aaKnown RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 SFT2D1Q8WV19 159 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 MOB3AQ96BX8 217 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 SARAFQ96BY9 339 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 MSI2Q96DH6 328 aaKnown RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 LOXL4Q96JB6 756 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 RARRES2Q99969 163 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 USB1Q9BQ65 265 aaKnown RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 NKX6-2Q9C056 277 aaPredicted RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 SPACA1Q9HBV2 294 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 RCC2Q9P258 522 aaKnown RBP4.74□□□□□ -1.65
LIMA1-215ENST00000552823 URGCP-MRPS24S4R325 110 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 TLN2Q9Y4G6 2542 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 TANC2Q9HCD6 1990 aa4.74□□□□□ -1.65
LIMA1-215ENST00000552823 HIVEP3Q5T1R4 2406 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 POLQO75417 2590 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 BORCS7-ASMTA0A0B4J1R7 106 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 IGSF23A1L1A6 192 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 TMEM218A2RU14 115 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 SMCO3A2RU48 225 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ZNF724A8MTY0 619 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 E5RGE8 158 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 RNASEK-C17orf49H0YIS7 233 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 LINC01387J3KSC0 135 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 PGLYRP1O75594 196 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 DEDDO75618 318 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 HAND1O96004 215 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ARG1P05089 322 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 DTYMKP23919 212 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 COL8A2P25067 703 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 ALDH3B1P43353 468 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 CCL20P78556 96 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 GABRA6Q16445 453 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 C22orf34Q6ZV56 151 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 CCDC36Q8IYA8 594 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 SELENOHQ8IZQ5 122 aaKnown RBP4.73□□□□□ -1.65
LIMA1-215ENST00000552823 OR2C3Q8N628 320 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 TCTEX1D2Q8WW35 142 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 NINJ1Q92982 152 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 GPR146Q96CH1 333 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 C10orf35Q96D05 121 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 IP6K3Q96PC2 410 aa4.73□□□□□ -1.65
LIMA1-215ENST00000552823 RSG1Q9BU20 258 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms