RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FAM90A13PP0C7W8 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A14PP0C7W9 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 FAM90A24PP0C7X0 464 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 IAPPP10997 89 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SELEP16581 610 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 CA6P23280 308 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 F2RP25116 425 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 WNT5AP41221 380 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 RPS10P46783 165 aaKnown RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 ARL16Q0P5N6 197 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 HNF4GQ14541 408 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SSPNQ14714 243 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 MPV17LQ2QL34 196 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 C4orf48Q5BLP8 95 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF324BQ6AW86 544 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 OR2T2Q6IF00 324 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 C6orf15Q6UXA7 325 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 HEPN1Q6WQI6 88 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SSX7Q7RTT5 188 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 KDF1Q8NAX2 398 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 CLEC18CQ8NCF0 446 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 APOBEC3DQ96AK3 386 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 MUCL1Q96DR8 90 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 POM121L2Q96KW2 1035 aa6.38□□□□□ -1.39
LIMA1-213ENST00000552720 METTL1Q9UBP6 276 aaKnown RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 BOKQ9UMX3 212 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-213ENST00000552720 SMG1Q96Q15 3661 aaKnown RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 KIR2DS1A0A191URI9 304 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 A0A1B0GW64 132 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 KIAA1324LA8MWY0 1029 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 H0Y980 276 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 HSPA12AO43301 675 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 SS18L1O75177 396 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 CER1O95813 267 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 IGLV2-14P01704 120 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 IGHEP01854 428 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 FABP1P07148 127 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 SMIM6P0DI80 62 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 TAGLN2P37802 199 aaKnown RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 KIR2DS4P43632 304 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 FGF8P55075 233 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 ERVFRD-1P60508 538 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 DLK1P80370 383 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 KIR2DS1Q14954 304 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 AKR1C8PQ5T2L2 129 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 FAM53AQ6NSI3 398 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF429Q86V71 674 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 CMTM1Q8IZ96 169 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 OR5D13Q8NGL4 314 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 OR1K1Q8NGR3 316 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 CLDND2Q8NHS1 167 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 Q8WTZ3 238 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 OR5P3Q8WZ94 311 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 TTTY12Q9BZ98 90 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 LINC00470Q9BZP3 86 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 DLL3Q9NYJ7 618 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 FOXJ2Q9P0K8 574 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 KIAA1456Q9P272 454 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 PPP1R3CQ9UQK1 317 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 OR2W1Q9Y3N9 320 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 WSB1Q9Y6I7 421 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 TGIF2-C20orf24A0A0A6YYL0 155 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 A0A1W2PNU3 283 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 A0A1W2PR80 420 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 C9orf172C9J069 976 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 YKT6O15498 198 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 PPIHO43447 177 aaKnown RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 METTL15P1P0C7V9 234 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 RD3LP0DJH9 198 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 UBE2KP61086 200 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 RPL23AP62750 156 aaKnown RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 TLE1Q04724 770 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 ELOBQ15370 118 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 FAM180AQ6UWF9 173 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 OR5A2Q8NGI9 324 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 OR10J5Q8NHC4 309 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 APH1AQ96BI3 265 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 HIST1H2AAQ96QV6 131 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 ATP5SQ99766 215 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 HEATR1Q9H583 2144 aaKnown RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 CACNG5Q9UF02 275 aa6.37□□□□□ -1.39
LIMA1-213ENST00000552720 MRPS18CQ9Y3D5 142 aaKnown RBP6.37□□□□□ -1.39
LIMA1-213ENST00000552720 HCFC1P51610 2035 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 TRBV23-1A0A0A0MS06 115 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 IFITM10A6NMD0 228 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 B4E171 279 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 AP4M1O00189 453 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 SIRPB1O00241 398 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 S100A8P05109 93 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 S100A9P06702 114 aaKnown RBP6.36□□□□□ -1.39
LIMA1-213ENST00000552720 TSPAN7P41732 249 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 TAS2R30P59541 319 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 HLA-DRB3P79483 266 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 KIAA0141Q14154 515 aaPredicted RBP6.36□□□□□ -1.39
LIMA1-213ENST00000552720 OR1C1Q15619 314 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 ZNF726P1Q15940 193 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 SRSF7Q16629 238 aaKnown RBP eCLIP6.36□□□□□ -1.39
LIMA1-213ENST00000552720 NRN1LQ496H8 165 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 SLC25A24Q6NUK1 477 aa6.36□□□□□ -1.39
LIMA1-213ENST00000552720 CDPF1Q6NVV7 123 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms