RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 NRACQ8N912 160 aa4.77□□□□□ -1.65
VPS29-210ENST00000552130 CSNK1G2-AS1Q8NCQ2 148 aa4.77□□□□□ -1.65
VPS29-210ENST00000552130 OR5K1Q8NHB7 308 aa4.77□□□□□ -1.65
VPS29-210ENST00000552130 FXYD5Q96DB9 178 aa4.77□□□□□ -1.65
VPS29-210ENST00000552130 CAPZA3Q96KX2 299 aa4.77□□□□□ -1.65
VPS29-210ENST00000552130 KLF6Q99612 283 aaPredicted RBP4.77□□□□□ -1.65
VPS29-210ENST00000552130 HSPB9Q9BQS6 159 aa4.77□□□□□ -1.65
VPS29-210ENST00000552130 PBDC1Q9BVG4 233 aa4.77□□□□□ -1.65
VPS29-210ENST00000552130 ACER3Q9NUN7 267 aa4.77□□□□□ -1.65
VPS29-210ENST00000552130 NPHP4O75161 1426 aaPredicted RBP4.77□□□□□ -1.65
VPS29-210ENST00000552130 POGZQ7Z3K3 1410 aa4.77□□□□□ -1.65
VPS29-210ENST00000552130 DHX57Q6P158 1386 aaKnown RBP4.77□□□□□ -1.65
VPS29-210ENST00000552130 PTPRJQ12913 1337 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 ZNF518AQ6AHZ1 1483 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 ARAP1Q96P48 1450 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 IGKV1-8A0A0C4DH67 115 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 A0A0G2JN53 185 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 LOC389332A0A1B0GUA5 103 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 H7C1C5 153 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 DEGS1O15121 323 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 IGHG2P01859 326 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 GADD45AP24522 165 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 TALDO1P37837 337 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 RAB13P51153 203 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 CTBP2P56545 445 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 SYNJ2BPP57105 145 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 LCN6P62502 163 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 IFITM3Q01628 133 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 RBMY1FQ15415 496 aaKnown RBP4.76□□□□□ -1.65
VPS29-210ENST00000552130 C9orf66Q5T8R8 295 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 LEMD1Q68G75 181 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 UHRF1BP1Q6BDS2 1440 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 PLET1Q6UQ28 207 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 FBXW12Q6X9E4 464 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 VN1R4Q7Z5H5 301 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 ZNF589Q86UQ0 364 aaPredicted RBP4.76□□□□□ -1.65
VPS29-210ENST00000552130 SLC25A45Q8N413 288 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 OR8S1Q8NH09 359 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 OR4K15Q8NH41 348 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 NEURL3Q96EH8 262 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 SLC35E1Q96K37 410 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 LINC01587Q99440 93 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 ZNF184Q99676 751 aaPredicted RBP4.76□□□□□ -1.65
VPS29-210ENST00000552130 POLR2J2Q9GZM3 115 aaKnown RBP4.76□□□□□ -1.65
VPS29-210ENST00000552130 POLR2J3Q9H1A7 115 aaKnown RBP4.76□□□□□ -1.65
VPS29-210ENST00000552130 TMEM216Q9P0N5 145 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 WASHC3Q9Y3C0 194 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 RFNGQ9Y644 331 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 ENPP4Q9Y6X5 453 aa4.76□□□□□ -1.65
VPS29-210ENST00000552130 BICRAQ9NZM4 1560 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 A0A087WX48 190 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 IGHV6-1A0A0B4J1U7 121 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 TRAV26-2A0A0B4J265 109 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 CCDC160A6NGH7 325 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 INMT-MINDY4F8WBC2 141 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 UPK1AO00322 258 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 TPST1O60507 370 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 KBTBD11O94819 623 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 IFNGP01579 166 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 IGHV3-48P01763 117 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 IGHMP01871 453 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 APOA2P02652 100 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 SERPINE1P05121 402 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 RPL34P49207 117 aaKnown RBP4.75□□□□□ -1.65
VPS29-210ENST00000552130 UBE2NP61088 152 aaKnown RBP4.75□□□□□ -1.65
VPS29-210ENST00000552130 FBXL19-AS1Q494R0 122 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 ZNF404Q494X3 552 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 ZFAND6Q6FIF0 208 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 FAM53AQ6NSI3 398 aaPredicted RBP4.75□□□□□ -1.65
VPS29-210ENST00000552130 CLEC20AQ6ZU45 233 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 CT55Q8WUE5 264 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 FAM151AQ8WW52 585 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 GHSRQ92847 366 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 TCEAL3Q969E4 200 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 APOBEC3DQ96AK3 386 aaPredicted RBP4.75□□□□□ -1.65
VPS29-210ENST00000552130 ROPN1LQ96C74 230 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 SLC25A44Q96H78 314 aaPredicted RBP4.75□□□□□ -1.65
VPS29-210ENST00000552130 REEP6Q96HR9 211 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 CNBD2Q96M20 576 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 CCDC115Q96NT0 180 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 OR7D2Q96RA2 312 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 GGACTQ9BVM4 153 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 MRPL20Q9BYC9 149 aaKnown RBP4.75□□□□□ -1.65
VPS29-210ENST00000552130 NOX3Q9HBY0 568 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 SLCO1B3Q9NPD5 702 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 CCL28Q9NRJ3 127 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 MARCH5Q9NX47 278 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 INSIG2Q9Y5U4 225 aa4.75□□□□□ -1.65
VPS29-210ENST00000552130 LYPLA1O75608 230 aaPredicted RBP4.74□□□□□ -1.65
VPS29-210ENST00000552130 DUS4LO95620 317 aaKnown RBP4.74□□□□□ -1.65
VPS29-210ENST00000552130 TOMM40O96008 361 aa4.74□□□□□ -1.65
VPS29-210ENST00000552130 IFNA10P01566 189 aa4.74□□□□□ -1.65
VPS29-210ENST00000552130 FABP3P05413 133 aa4.74□□□□□ -1.65
VPS29-210ENST00000552130 NCALDP61601 193 aa4.74□□□□□ -1.65
VPS29-210ENST00000552130 ZNF616Q08AN1 781 aa4.74□□□□□ -1.65
VPS29-210ENST00000552130 ADIGQ0VDE8 80 aa4.74□□□□□ -1.65
VPS29-210ENST00000552130 TMEM267Q0VDI3 215 aaPredicted RBP4.74□□□□□ -1.65
VPS29-210ENST00000552130 IL15RAQ13261 267 aa4.74□□□□□ -1.65
VPS29-210ENST00000552130 LRRC10Q5BKY1 277 aa4.74□□□□□ -1.65
VPS29-210ENST00000552130 COA6Q5JTJ3 125 aaKnown RBP4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms