RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TRGV8A0A0C4DH27 118 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 CRYBA1P05813 215 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 MELTFP08582 738 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 HKR1P10072 659 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 ZNF561Q8N587 486 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 FADS6Q8N9I5 356 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 HEXA-AS1Q9H8Q6 139 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 NGBQ9NPG2 151 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 LAMP3Q9UQV4 416 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 TICRRQ7Z2Z1 1910 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 RBFOX3A6NFN3 312 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 CRYM-AS1A6NIL9 109 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 NKX6-3A6NJ46 265 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 DEDDO75618 318 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 CDS2O95674 445 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 HLA-DRB3P79483 266 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 FOXC1Q12948 553 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 FFAR4Q5NUL3 377 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 TMEM252Q8N6L7 170 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 OR10X1Q8NGY0 326 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 CCL17Q92583 94 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 TMEM54Q969K7 222 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 UHRF2Q96PU4 802 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 SH3BGRL3Q9H299 93 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 C5orf42Q9H799 3197 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 ZNF708P17019 499 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 FOXG1P55316 489 aaPredicted RBP13.5□□□□□ -0.25
CUX1-211ENST00000546411 BATFQ16520 125 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 NCR3LG1Q68D85 454 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 RBMXL3Q8N7X1 1067 aaKnown RBP13.5□□□□□ -0.25
CUX1-211ENST00000546411 LHFPL5Q8TAF8 219 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 FGFBP3Q8TAT2 258 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 CD8AP01732 235 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 FABP9Q0Z7S8 132 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 SLC23A3Q6PIS1 610 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 MOB1BQ7L9L4 216 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 RSG1Q9BU20 258 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 EGLN1Q9GZT9 426 aa13.5□□□□□ -0.25
CUX1-211ENST00000546411 HTTP42858 3142 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 ST8SIA5O15466 376 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 CYTIPO60759 359 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 ZNF735P0CB33 412 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 RPS23P62266 143 aaKnown RBP13.49□□□□□ -0.25
CUX1-211ENST00000546411 POMT1Q9Y6A1 747 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 NOTCH3Q9UM47 2321 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 USF3Q68DE3 2245 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 DOPEY2Q9Y3R5 2298 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 F2RP25116 425 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 RAB13P51153 203 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 MOGAT3Q86VF5 341 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 RAB39BQ96DA2 213 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 ABHD14BQ96IU4 210 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 TP53RKQ96S44 253 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 RTBDNQ9BSG5 229 aaPredicted RBP13.49□□□□□ -0.25
CUX1-211ENST00000546411 TANC1Q9C0D5 1861 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 CUL9Q8IWT3 2517 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 SYNGR3O43761 229 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 COMMD5Q9GZQ3 224 aa13.49□□□□□ -0.25
CUX1-211ENST00000546411 GNB1P62873 340 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 HES1Q14469 280 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 CPEB3Q8NE35 698 aaKnown RBP13.48□□□□□ -0.25
CUX1-211ENST00000546411 CIB3Q96Q77 187 aaPredicted RBP13.48□□□□□ -0.25
CUX1-211ENST00000546411 SEC11CQ9BY50 192 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 TRGV10A0A0A0MS01 117 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 NAAAQ02083 359 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 GFRALQ6UXV0 394 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 AURKAIP1Q9NWT8 199 aaPredicted RBP13.48□□□□□ -0.25
CUX1-211ENST00000546411 OR1A1Q9P1Q5 309 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 APOA2P02652 100 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 CYC1P08574 325 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 SPP1P10451 314 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 ERVS71-1P61550 626 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 FOXO1Q12778 655 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 SLC16A13Q7RTY0 426 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 OR52L2PQ8NGH6 319 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 ACY3Q96HD9 319 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 DLL3Q9NYJ7 618 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 MTCH1Q9NZJ7 389 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 CLN8Q9UBY8 286 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 LRRK1Q38SD2 2015 aa13.48□□□□□ -0.25
CUX1-211ENST00000546411 RHBDL1O75783 438 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 SP9P0CG40 484 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 OR13D1Q8NGV5 346 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 ADAMTS17Q8TE56 1095 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 MOB3AQ96BX8 217 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 TMEM222Q9H0R3 208 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 PINLYPA6NC86 204 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 OR2H2O95918 312 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 SCGB1D1O95968 90 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 FGF2P09038 288 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 OR5G3P0C626 314 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 KLF3P57682 345 aaPredicted RBP13.47□□□□□ -0.25
CUX1-211ENST00000546411 ACOT6Q3I5F7 207 aaPredicted RBP13.47□□□□□ -0.25
CUX1-211ENST00000546411 ZNF818PQ6ZRF7 136 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 COMMD1Q8N668 190 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 H0YIZ8 118 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 UCP2P55851 309 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 ETV3LQ6ZN32 361 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 TAAR6Q96RI8 345 aa13.47□□□□□ -0.25
CUX1-211ENST00000546411 RNF122Q9H9V4 155 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms