RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 LAMP3Q9UQV4 416 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 A0A1B0GU03 582 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 BAXQ07812 192 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 ZNF816Q0VGE8 651 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 GUK1Q16774 197 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 C1QTNF12Q5T7M4 302 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 ZNF826PQ6ZT77 177 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 GTF3AQ92664 365 aaKnown RBP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 HINT2Q9BX68 163 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 OR2D2Q9H210 308 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 ESRP2Q9H6T0 727 aaKnown RBP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 NGBQ9NPG2 151 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 SMCO4Q9NRQ5 59 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 AUP1Q9Y679 476 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 CEP250Q9BV73 2442 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 FOXI3A8MTJ6 420 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 BMP5P22003 454 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 PSG7Q13046 419 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 DEFB108BQ8NET1 73 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 OR5D13Q8NGL4 314 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 FAM234AQ9H0X4 552 aa9.19□□□□□ -0.94
CLIP1-213ENST00000540338 PUS1Q9Y606 427 aaKnown RBP eCLIP9.19□□□□□ -0.94
CLIP1-213ENST00000540338 CDH23Q9H251 3354 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 TRIM77I1YAP6 450 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 RND3P61587 244 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 AESQ08117 197 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 CXorf66Q5JRM2 361 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-213ENST00000540338 TRAT1Q6PIZ9 186 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 C1orf162Q8NEQ5 155 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-213ENST00000540338 ABHD14BQ96IU4 210 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 SAV1Q9H4B6 383 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-213ENST00000540338 UNC80Q8N2C7 3258 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 MEX3AA1L020 520 aaKnown RBP9.18□□□□□ -0.94
CLIP1-213ENST00000540338 OR13C7P0DN81 318 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 DYNLT3P51808 116 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 IGFBP7Q16270 282 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 FAM122CQ6P4D5 195 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 C9orf106Q8NAJ2 232 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 OR4A16Q8NH70 328 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 MRPL30Q8TCC3 161 aaKnown RBP9.18□□□□□ -0.94
CLIP1-213ENST00000540338 CLEC18AA5D8T8 446 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 SYNGR2O43760 224 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 CD200P41217 278 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 TMEM252Q8N6L7 170 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 CLEC18CQ8NCF0 446 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 OR10Z1Q8NGY1 313 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 TAAR6Q96RI8 345 aa9.18□□□□□ -0.94
CLIP1-213ENST00000540338 C1orf196B1AJZ1 125 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 SRSF7Q16629 238 aaKnown RBP eCLIP9.17□□□□□ -0.94
CLIP1-213ENST00000540338 DTX1Q86Y01 620 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 WFDC8Q8IUA0 241 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 LRTM2Q8N967 370 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 ZBTB34Q8NCN2 500 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 CLRN3Q8NCR9 226 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 IL22RA2Q969J5 263 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 ERGIC1Q969X5 290 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 ABCD4O14678 606 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 GLRX5Q86SX6 157 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 MSI2Q96DH6 328 aaKnown RBP9.17□□□□□ -0.94
CLIP1-213ENST00000540338 C18orf12Q96KH6 178 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 SEC11CQ9BY50 192 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 REG4Q9BYZ8 158 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 OR1A1Q9P1Q5 309 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 PSG11Q9UQ72 335 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 BTBD17A6NE02 478 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 LRRC30A6NM36 301 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 DEFB108AA8MXU0 73 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 IQCF6A8MYZ5 107 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 NAPSAO96009 420 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 MMP9P14780 707 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 ZNF14P17017 642 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-213ENST00000540338 NFYBP25208 207 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 NUBP1P53384 320 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 TMEM267Q0VDI3 215 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-213ENST00000540338 SRSF6Q13247 344 aaKnown RBP9.17□□□□□ -0.94
CLIP1-213ENST00000540338 HNF4GQ14541 408 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 KRTAP27-1Q3LI81 207 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 ACSF3Q4G176 576 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-213ENST00000540338 SLC39A9Q9NUM3 307 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 MYO7BQ6PIF6 2116 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 COL5A1P20908 1838 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-213ENST00000540338 IGHV3-43A0A0B4J1X8 118 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 TRAV24A0A0B4J272 114 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 OR5H1A6NKK0 313 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 IGHV3-43DP0DP04 118 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 CEACAM1P13688 526 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 UCP1P25874 307 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 FOXC1Q12948 553 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 C1orf185Q5T7R7 199 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 CIB3Q96Q77 187 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-213ENST00000540338 DYNLRB1Q9NP97 96 aa9.17□□□□□ -0.94
CLIP1-213ENST00000540338 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-213ENST00000540338 SPTBN2O15020 2390 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 MED19A0JLT2 244 aaPredicted RBP9.16□□□□□ -0.94
CLIP1-213ENST00000540338 ZNF503-AS2A6NEH8 195 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 SIGLEC5O15389 551 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 IFNA10P01566 189 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 IGHG3P01860 377 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 CECR9P0C854 216 aa9.16□□□□□ -0.94
CLIP1-213ENST00000540338 RPS2P15880 293 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms