RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 CD1BP29016 333 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 ZNF134P52741 427 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 F2RL1P55085 397 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 RAB25P57735 213 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 RPS11P62280 158 aaKnown RBP eCLIP6.63□□□□□ -1.35
USP28-203ENST00000537490 DGCR2P98153 550 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 RIPK1Q13546 671 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 GPR50Q13585 617 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 KIR2DS1Q14954 304 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 DEFB136Q30KP8 78 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 CT45A1Q5HYN5 189 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 SYT6Q5T7P8 510 aaPredicted RBP6.63□□□□□ -1.35
USP28-203ENST00000537490 DMKNQ6E0U4 476 aaPredicted RBP6.63□□□□□ -1.35
USP28-203ENST00000537490 UNQ9370/PRO34162Q6UXP9 181 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 TMPRSS11AQ6ZMR5 421 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 C5orf24Q7Z6I8 188 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 LINC00596Q86U02 117 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 PQLC1Q8N2U9 271 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 ZFP41Q8N8Y5 198 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 C8orf31Q8N9H6 132 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 ZNF439Q8NDP4 499 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 OR10V1Q8NGI7 309 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 OR4K15Q8NH41 348 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 OR1L1Q8NH94 360 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 CT45A3Q8NHU0 189 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 NEK7Q8TDX7 302 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 TFAP2CQ92754 450 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 GHSRQ92847 366 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 SMIM19Q96E16 107 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 S1PR3Q99500 378 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 S100A13Q99584 98 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 ZNF184Q99676 751 aaPredicted RBP6.63□□□□□ -1.35
USP28-203ENST00000537490 HSPB9Q9BQS6 159 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.63□□□□□ -1.35
USP28-203ENST00000537490 PAK1IP1Q9NWT1 392 aaPredicted RBP6.63□□□□□ -1.35
USP28-203ENST00000537490 TRAPPC2LQ9UL33 140 aa6.63□□□□□ -1.35
USP28-203ENST00000537490 A0A1W2PPK0 400 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 C12orf77C9JDV5 145 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 MCRIP1C9JLW8 97 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 ZNF780AO75290 641 aaPredicted RBP6.62□□□□□ -1.35
USP28-203ENST00000537490 MOSP00540 346 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 HBZP02008 142 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 ELANEP08246 267 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 IL3RAP26951 378 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 CDX1P47902 265 aaPredicted RBP6.62□□□□□ -1.35
USP28-203ENST00000537490 LUMP51884 338 aaPredicted RBP6.62□□□□□ -1.35
USP28-203ENST00000537490 ZNF137PP52743 207 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 CFHR3Q02985 330 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 FOXE3Q13461 319 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 Q3ZCU0 254 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 CXorf66Q5JRM2 361 aaPredicted RBP6.62□□□□□ -1.35
USP28-203ENST00000537490 GLIPR1L1Q6UWM5 242 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 SLC25A48Q6ZT89 311 aaKnown RBP6.62□□□□□ -1.35
USP28-203ENST00000537490 C10orf67Q8IYJ2 551 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 STX19Q8N4C7 294 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 RNF152Q8N8N0 203 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 ZNF485Q8NCK3 441 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 ZNF555Q8NEP9 628 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 MUL1Q969V5 352 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 PGLYRP3Q96LB9 341 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 WWC2-AS2Q96NR7 200 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 RASL11BQ9BPW5 248 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 GON7Q9BXV9 100 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 BANF2Q9H503 90 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 ETAA1Q9NY74 926 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 RCC2Q9P258 522 aaKnown RBP6.62□□□□□ -1.35
USP28-203ENST00000537490 GNG12Q9UBI6 72 aa6.62□□□□□ -1.35
USP28-203ENST00000537490 DIMT1Q9UNQ2 313 aaKnown RBP6.62□□□□□ -1.35
USP28-203ENST00000537490 MRPS28Q9Y2Q9 187 aaKnown RBP6.62□□□□□ -1.35
USP28-203ENST00000537490 EXOSC1Q9Y3B2 195 aaKnown RBP6.62□□□□□ -1.35
USP28-203ENST00000537490 TRBV5-7A0A0A0MS05 114 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 SPINT2O43291 252 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 RAMP3O60896 148 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 BAG2O95816 211 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 IGHG4P01861 327 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 RCC1P18754 421 aaPredicted RBP6.61□□□□□ -1.35
USP28-203ENST00000537490 MYL12AP19105 171 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 ADARB1P78563 741 aaKnown RBP6.61□□□□□ -1.35
USP28-203ENST00000537490 GPR176Q14439 515 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 Q499Y3 187 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 SIGIRRQ6IA17 410 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 RAB12Q6IQ22 244 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 LYPD6Q86Y78 171 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 GAPTQ8N292 157 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 PRR18Q8N4B5 295 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 JAGN1Q8N5M9 183 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 FAM71E2Q8N5Q1 922 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 OR8H1Q8NGG4 311 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 OR52L2PQ8NGH6 319 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 OR8U1Q8NH10 309 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 GGHQ92820 318 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 TMEM80Q96HE8 168 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 RITA1Q96K30 269 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 KCTD7Q96MP8 289 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 PRR25Q96S07 402 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 SMPD3Q9NY59 655 aaPredicted RBP6.61□□□□□ -1.35
USP28-203ENST00000537490 ZMAT5Q9UDW3 170 aaKnown RBP6.61□□□□□ -1.35
USP28-203ENST00000537490 SCOCQ9UIL1 159 aa6.61□□□□□ -1.35
USP28-203ENST00000537490 LSM4Q9Y4Z0 139 aaKnown RBP6.61□□□□□ -1.35
USP28-203ENST00000537490 PEX16Q9Y5Y5 336 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms