RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TMEM176BQ3YBM2 270 aaPredicted RBP1.29□□□□□ -2.2
CD44-238ENST00000534296 CENPWQ5EE01 88 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 HENMT1Q5T8I9 393 aaKnown RBP1.29□□□□□ -2.2
CD44-238ENST00000534296 CYHR1Q6ZMK1 362 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 KRTCAP2Q8N6L1 136 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 NATD1Q8N6N6 113 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 DNAAF3Q8N9W5 541 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 OR5D18Q8NGL1 313 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 OR11L1Q8NGX0 322 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 KCTD4Q8WVF5 259 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 OR5P2Q8WZ92 322 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 MAL2Q969L2 176 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 MGLLQ99685 303 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 DCUN1D5Q9BTE7 237 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 TMEM208Q9BTX3 173 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 MED18Q9BUE0 208 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 MND1Q9BWT6 205 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 UGT2B28Q9BY64 529 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 EIF5A2Q9GZV4 153 aaKnown RBP1.29□□□□□ -2.2
CD44-238ENST00000534296 METTL9Q9H1A3 318 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 OR5V1Q9UGF6 321 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 CD300AQ9UGN4 299 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 DNAJC12Q9UKB3 198 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 CFAP45Q9UL16 551 aa1.29□□□□□ -2.2
CD44-238ENST00000534296 ZNF443Q9Y2A4 671 aaPredicted RBP1.29□□□□□ -2.2
CD44-238ENST00000534296 TBL2Q9Y4P3 447 aaKnown RBP1.29□□□□□ -2.2
CD44-238ENST00000534296 ZNF407Q9C0G0 2248 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 MAST4O15021 2626 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 IGHV3OR15-7A0A075B7D8 119 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 DAPL1A0PJW8 107 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 SDHAF1A6NFY7 115 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 ERICH4A6NGS2 130 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 C9J4A7 227 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 F5H5K5 113 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 H3BSA7 217 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 GPR171O14626 319 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 SGCEO43556 437 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 ZNF73O43830 326 aaPredicted RBP1.28□□□□□ -2.2
CD44-238ENST00000534296 STK16O75716 305 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 SOX14O95416 240 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 ATP6V1G2O95670 118 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 LIMS3P0CW19 117 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 LIMS4P0CW20 117 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 CTLA4P16410 223 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 LGALS3P17931 250 aaKnown RBP1.28□□□□□ -2.2
CD44-238ENST00000534296 CFL1P23528 166 aaKnown RBP1.28□□□□□ -2.2
CD44-238ENST00000534296 ATP6V0CP27449 155 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 AGTR1P30556 359 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 EVI2BP34910 448 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 LPAR6P43657 344 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 DLX6P56179 175 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 KRTAP12-3P60328 96 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 SLC35A2P78381 396 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 TNFRSF9Q07011 255 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 SLAMF1Q13291 335 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 C1DQ13901 141 aaKnown RBP1.28□□□□□ -2.2
CD44-238ENST00000534296 C10orf91Q5T1B1 145 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 SPNS3Q6ZMD2 512 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 CLEC20AQ6ZU45 233 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 MTERF4Q7Z6M4 381 aaKnown RBP1.28□□□□□ -2.2
CD44-238ENST00000534296 SPATA24Q86W54 205 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 LYPD6Q86Y78 171 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 ZIC4Q8N9L1 334 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 OR9I1Q8NGQ6 314 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 CYGBQ8WWM9 190 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.28□□□□□ -2.2
CD44-238ENST00000534296 RORBQ92753 470 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 RAD51AP1Q96B01 352 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 TMEM56Q96MV1 263 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 MBOAT7Q96N66 472 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 TSSK6Q9BXA6 273 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 OR52A5Q9H2C5 316 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 METTL17Q9H7H0 456 aaPredicted RBP1.28□□□□□ -2.2
CD44-238ENST00000534296 ASCL3Q9NQ33 180 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 NRBP2Q9NSY0 501 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 SNX10Q9Y5X0 201 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 PIK3R4Q99570 1358 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 CHD2O14647 1828 aaKnown RBP1.28□□□□□ -2.2
CD44-238ENST00000534296 CEP350Q5VT06 3117 aa1.28□□□□□ -2.2
CD44-238ENST00000534296 COL6A3P12111 3177 aa1.28□□□□□ -2.21
CD44-238ENST00000534296 ATAD5Q96QE3 1844 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 MYO5BQ9ULV0 1848 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 ARAP3Q8WWN8 1544 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 LRPPRCP42704 1394 aaKnown RBP1.27□□□□□ -2.21
CD44-238ENST00000534296 A0A1B0GU33 70 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 A0A1B0GX12 115 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 TRPC5OSA6NMA1 111 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 M0QYV0 167 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 ZW10O43264 779 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 STX10O60499 249 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 NPPAP01160 153 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 GP1BAP07359 652 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 CTSEP14091 401 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 CASQ1P31415 396 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 MAGEA6P43360 314 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 CD151P48509 253 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 KRTAP12-4P60329 112 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 CLEC6AQ6EIG7 209 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 EBLN2Q6P2I7 272 aa1.27□□□□□ -2.21
CD44-238ENST00000534296 MARCH3Q86UD3 253 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms