RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 INPP1P49441 399 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 DEFA1P59665 94 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 DEFA3P59666 94 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 KLRD1Q13241 179 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 MIDNQ504T8 468 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 NKAPLQ5M9Q1 402 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 HACD4Q5VWC8 232 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 ZNF626Q68DY1 528 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 TRAT1Q6PIZ9 186 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 TRAPPC6BQ86SZ2 158 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 NEK7Q8TDX7 302 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 KIRREL1Q96J84 757 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 TMEM133Q9H2Q1 129 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 RIMS4Q9H426 269 aaPredicted RBP11.79□□□□□ -0.52
CPSF1-206ENST00000531480 RHBDL2Q9NX52 303 aa11.79□□□□□ -0.52
CPSF1-206ENST00000531480 A0A0A6YYJ9 748 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 SERPINE3A8MV23 424 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 F2RL2O00254 374 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 HPGDSO60760 199 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 HIST1H1DP16402 221 aaKnown RBP11.78□□□□□ -0.52
CPSF1-206ENST00000531480 FPR2P25090 351 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 SSTR5P35346 364 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 MNDAP41218 407 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 RUSC1-AS1Q66K80 236 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 OR52W1Q6IF63 320 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 BRD3OSQ6XYD6 125 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 ZNF782Q6ZMW2 699 aaPredicted RBP11.78□□□□□ -0.52
CPSF1-206ENST00000531480 CCDC190Q86UF4 302 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 BCL6BQ8N143 479 aaPredicted RBP11.78□□□□□ -0.52
CPSF1-206ENST00000531480 OR52M1Q8NGK5 317 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 OR13D1Q8NGV5 346 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 MRGPRDQ8TDS7 321 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 RAB3CQ96E17 227 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 ZNF48Q96MX3 618 aaPredicted RBP11.78□□□□□ -0.52
CPSF1-206ENST00000531480 MS4A7Q9GZW8 240 aaPredicted RBP11.78□□□□□ -0.52
CPSF1-206ENST00000531480 AKIP1Q9NQ31 210 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 ING3Q9NXR8 418 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 EXTL2Q9UBQ6 330 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 AK3Q9UIJ7 227 aa11.78□□□□□ -0.52
CPSF1-206ENST00000531480 IGHV3OR16-10A0A075B7F0 116 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 IGHV2-26A0A0B4J1V2 119 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 TRAV39A0A0B4J263 110 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 C12orf77C9JDV5 145 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 NPFFO15130 113 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 IGLV1-47P01700 117 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 RCC1P18754 421 aaPredicted RBP11.77□□□□□ -0.53
CPSF1-206ENST00000531480 LOXL3P58215 753 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 PRB3Q04118 309 aaPredicted RBP11.77□□□□□ -0.53
CPSF1-206ENST00000531480 IL18Q14116 193 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 TMEM30BQ3MIR4 351 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 PYDC2Q56P42 97 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 TMEM69Q5SWH9 247 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 C6orf183Q5T699 404 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 PRAMEF5Q5TYX0 476 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 CNIH2Q6PI25 160 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 LAX1Q8IWV1 398 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 OR4K15Q8NH41 348 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 SLC6A7Q99884 636 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 ATG5Q9H1Y0 275 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 IDI2-AS1Q9NZ38 188 aa11.77□□□□□ -0.53
CPSF1-206ENST00000531480 SOX21Q9Y651 276 aaPredicted RBP11.77□□□□□ -0.53
CPSF1-206ENST00000531480 XRCC3O43542 346 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 IFNA2P01563 188 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 GSTT2BP0CG30 244 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 OMGP23515 440 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 SAA4P35542 130 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 AP3S2P59780 193 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 HILS1P60008 231 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 HMGN3Q15651 99 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 ZNF260Q3ZCT1 412 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 Q3ZCU0 254 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 OLFML2AQ68BL7 652 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 MOB1BQ7L9L4 216 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 PDZD9Q8IXQ8 264 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 PNKDQ8N490 385 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 C8orf31Q8N9H6 132 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 ZNF596Q8TC21 504 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 CCDC107Q8WV48 283 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 SUCNR1Q9BXA5 334 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 CLEC7AQ9BXN2 247 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 C12orf4Q9NQ89 552 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 TRAPPC2LQ9UL33 140 aa11.76□□□□□ -0.53
CPSF1-206ENST00000531480 ATRQ13535 2644 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 A0A0U1RQK1 487 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 CENPXA8MT69 81 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 CTDSPLO15194 276 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 MELTFP08582 738 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 GSTP1P09211 210 aaKnown RBP11.75□□□□□ -0.53
CPSF1-206ENST00000531480 GNB3P16520 340 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 ELK1P19419 428 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 SRSF7Q16629 238 aaKnown RBP eCLIP11.75□□□□□ -0.53
CPSF1-206ENST00000531480 DEFB112Q30KQ8 113 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 LDLRAD2Q5SZI1 272 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 UTF1Q5T230 341 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 TRIQKQ629K1 86 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 Q6ZS49 121 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 LDLRAD3Q86YD5 345 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 ABHD12Q8N2K0 398 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 BEND2Q8NDZ0 799 aa11.75□□□□□ -0.53
CPSF1-206ENST00000531480 OR4P4Q8NGL7 312 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms